Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0065.Seq
(620 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D26598-1|BAA05645.1| 205|Homo sapiens proteasome subunit HsC10-... 103 5e-22
BC013008-1|AAH13008.1| 205|Homo sapiens proteasome (prosome, ma... 103 5e-22
BC002570-1|AAH02570.1| 205|Homo sapiens proteasome (prosome, ma... 103 5e-22
DQ120692-1|ABB92464.1| 204|Homo sapiens rcPSMB3 protein. 89 1e-17
D00761-1|BAA00658.1| 241|Homo sapiens proteasome subunit C5 pro... 44 6e-04
BT019720-1|AAV38525.1| 241|Homo sapiens proteasome (prosome, ma... 44 6e-04
BC020807-1|AAH20807.1| 241|Homo sapiens proteasome (prosome, ma... 44 6e-04
BC000508-1|AAH00508.1| 241|Homo sapiens proteasome (prosome, ma... 44 6e-04
AL031259-8|CAA20287.1| 241|Homo sapiens proteasome (prosome, ma... 44 6e-04
AL008628-2|CAI19555.1| 241|Homo sapiens proteasome (prosome, ma... 44 6e-04
AB209078-1|BAD92315.1| 196|Homo sapiens proteasome beta 1 subun... 44 6e-04
AK223193-1|BAD96913.1| 241|Homo sapiens proteasome beta 1 subun... 43 8e-04
>D26598-1|BAA05645.1| 205|Homo sapiens proteasome subunit HsC10-II
protein.
Length = 205
Score = 103 bits (247), Expect = 5e-22
Identities = 52/103 (50%), Positives = 65/103 (63%)
Frame = +3
Query: 78 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*T 257
MSI++YNGGAV+AMKG++CVAIA D+RFGIQAQ V+T K P G +
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 258 QTVXQXXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
QTV Q FR NLY LKE + M++ LLY++RFGPY
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPY 103
Score = 60.9 bits (141), Expect = 4e-09
Identities = 34/73 (46%), Positives = 40/73 (54%)
Frame = +2
Query: 347 VVNLIV*PTFRPLLMEPVIAGLDPLX*PNPYGLXHGLIGCPNDPEDFVGIGPLFEKLYGM 526
V NL+ F P EPVIAGLDP P+ LIGCP +DFV G E++YGM
Sbjct: 91 VANLLYEKRFGPYYTEPVIAGLDPKTF-KPFICSLDLIGCPMVTDDFVVSGTCAEQMYGM 149
Query: 527 CXALWGXPTXKPD 565
C +LW P PD
Sbjct: 150 CESLW-EPNMDPD 161
>BC013008-1|AAH13008.1| 205|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 3 protein.
Length = 205
Score = 103 bits (247), Expect = 5e-22
Identities = 52/103 (50%), Positives = 65/103 (63%)
Frame = +3
Query: 78 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*T 257
MSI++YNGGAV+AMKG++CVAIA D+RFGIQAQ V+T K P G +
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 258 QTVXQXXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
QTV Q FR NLY LKE + M++ LLY++RFGPY
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPY 103
Score = 60.9 bits (141), Expect = 4e-09
Identities = 34/73 (46%), Positives = 40/73 (54%)
Frame = +2
Query: 347 VVNLIV*PTFRPLLMEPVIAGLDPLX*PNPYGLXHGLIGCPNDPEDFVGIGPLFEKLYGM 526
V NL+ F P EPVIAGLDP P+ LIGCP +DFV G E++YGM
Sbjct: 91 VANLLYEKRFGPYYTEPVIAGLDPKTF-KPFICSLDLIGCPMVTDDFVVSGTCAEQMYGM 149
Query: 527 CXALWGXPTXKPD 565
C +LW P PD
Sbjct: 150 CESLW-EPNMDPD 161
>BC002570-1|AAH02570.1| 205|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 3 protein.
Length = 205
Score = 103 bits (247), Expect = 5e-22
Identities = 52/103 (50%), Positives = 65/103 (63%)
Frame = +3
Query: 78 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*T 257
MSI++YNGGAV+AMKG++CVAIA D+RFGIQAQ V+T K P G +
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 258 QTVXQXXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
QTV Q FR NLY LKE + M++ LLY++RFGPY
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPY 103
Score = 60.9 bits (141), Expect = 4e-09
Identities = 34/73 (46%), Positives = 40/73 (54%)
Frame = +2
Query: 347 VVNLIV*PTFRPLLMEPVIAGLDPLX*PNPYGLXHGLIGCPNDPEDFVGIGPLFEKLYGM 526
V NL+ F P EPVIAGLDP P+ LIGCP +DFV G E++YGM
Sbjct: 91 VANLLYEKRFGPYYTEPVIAGLDPKTF-KPFICSLDLIGCPMVTDDFVVSGTCAEQMYGM 149
Query: 527 CXALWGXPTXKPD 565
C +LW P PD
Sbjct: 150 CESLW-EPNMDPD 161
>DQ120692-1|ABB92464.1| 204|Homo sapiens rcPSMB3 protein.
Length = 204
Score = 89.0 bits (211), Expect = 1e-17
Identities = 45/103 (43%), Positives = 62/103 (60%)
Frame = +3
Query: 78 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*T 257
MSI++YNGGA++AMKG++ VAIA D+ FGIQAQ V+T + P G +
Sbjct: 1 MSIMSYNGGAIMAMKGKNRVAIAADRHFGIQAQMVTTDFQEIFPMGGWLYIGLAGLATDV 60
Query: 258 QTVXQXXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
Q V Q F+ NLY LKE + F+ M++ LY++ FGPY
Sbjct: 61 QRVAQCLKFQLNLYELKEGQQIKPYTFTSMVANFLYEKHFGPY 103
Score = 50.8 bits (116), Expect = 4e-06
Identities = 30/73 (41%), Positives = 38/73 (52%)
Frame = +2
Query: 347 VVNLIV*PTFRPLLMEPVIAGLDPLX*PNPYGLXHGLIGCPNDPEDFVGIGPLFEKLYGM 526
V N + F P +PVIAGLD L P+ LIG P +DFV G E++YGM
Sbjct: 91 VANFLYEKHFGPYYTDPVIAGLD-LKTFKPFSCSLDLIGFPMVTDDFVVNGSYAEQMYGM 149
Query: 527 CXALWGXPTXKPD 565
C +LW P P+
Sbjct: 150 CESLW-EPNMDPE 161
>D00761-1|BAA00658.1| 241|Homo sapiens proteasome subunit C5
protein.
Length = 241
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/98 (27%), Positives = 40/98 (40%)
Frame = +3
Query: 93 YNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQ 272
+NGG ++A+ G+D +A+D R + PK V S T+ +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 273 XXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
R +Y + MLST+LY RRF PY
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPY 132
>BT019720-1|AAV38525.1| 241|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 1 protein.
Length = 241
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/98 (27%), Positives = 40/98 (40%)
Frame = +3
Query: 93 YNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQ 272
+NGG ++A+ G+D +A+D R + PK V S T+ +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 273 XXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
R +Y + MLST+LY RRF PY
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPY 132
>BC020807-1|AAH20807.1| 241|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 1 protein.
Length = 241
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/98 (27%), Positives = 40/98 (40%)
Frame = +3
Query: 93 YNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQ 272
+NGG ++A+ G+D +A+D R + PK V S T+ +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 273 XXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
R +Y + MLST+LY RRF PY
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPY 132
>BC000508-1|AAH00508.1| 241|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 1 protein.
Length = 241
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/98 (27%), Positives = 40/98 (40%)
Frame = +3
Query: 93 YNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQ 272
+NGG ++A+ G+D +A+D R + PK V S T+ +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 273 XXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
R +Y + MLST+LY RRF PY
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPY 132
>AL031259-8|CAA20287.1| 241|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 1 protein.
Length = 241
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/98 (27%), Positives = 40/98 (40%)
Frame = +3
Query: 93 YNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQ 272
+NGG ++A+ G+D +A+D R + PK V S T+ +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 273 XXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
R +Y + MLST+LY RRF PY
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPY 132
>AL008628-2|CAI19555.1| 241|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 1 protein.
Length = 241
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/98 (27%), Positives = 40/98 (40%)
Frame = +3
Query: 93 YNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQ 272
+NGG ++A+ G+D +A+D R + PK V S T+ +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 273 XXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
R +Y + MLST+LY RRF PY
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPY 132
>AB209078-1|BAD92315.1| 196|Homo sapiens proteasome beta 1 subunit
variant protein.
Length = 196
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/98 (27%), Positives = 40/98 (40%)
Frame = +3
Query: 93 YNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQ 272
+NGG ++A+ G+D +A+D R + PK V S T+ +
Sbjct: 40 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 99
Query: 273 XXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
R +Y + MLST+LY RRF PY
Sbjct: 100 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPY 137
>AK223193-1|BAD96913.1| 241|Homo sapiens proteasome beta 1 subunit
variant protein.
Length = 241
Score = 43.2 bits (97), Expect = 8e-04
Identities = 27/98 (27%), Positives = 40/98 (40%)
Frame = +3
Query: 93 YNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQ 272
+NGG ++A+ G+D +A+D R + PK V S T+ +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYRLTDKTVIGCSGFHGDCLTLTK 94
Query: 273 XXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
R +Y + MLST+LY RRF PY
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPY 132
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,145,670
Number of Sequences: 237096
Number of extensions: 1811649
Number of successful extensions: 2774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2755
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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