Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0065.Seq
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 485 NLQGHLGNQSSHXTDHKGW 429
           N +GH G  SSH    K W
Sbjct: 393 NSRGHSGQSSSHHHGSKSW 411


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 494 IGPLFEKLYGMCXALWG 544
           +GPLF ++Y M  +L+G
Sbjct: 120 LGPLFCQIYAMLGSLFG 136


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 494 IGPLFEKLYGMCXALWG 544
           +GPLF ++Y M  +L+G
Sbjct: 86  LGPLFCQIYAMLGSLFG 102


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 201 FWEVGLILFELVYQT 157
           +W +G+++FEL+  T
Sbjct: 548 YWSLGVLMFELLTGT 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,926
Number of Sequences: 438
Number of extensions: 3195
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)