Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0064.Seq
         (403 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5JZX1 Cluster: Glycerol-3-phosphate dehydrogenase, put...    32   4.9  

>UniRef50_A5JZX1 Cluster: Glycerol-3-phosphate dehydrogenase,
           putative; n=5; Plasmodium|Rep: Glycerol-3-phosphate
           dehydrogenase, putative - Plasmodium vivax
          Length = 367

 Score = 31.9 bits (69), Expect = 4.9
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 72  NGSNSIQIRVNFXAIENVKKL-ALSTLHAVVAIATNSRSTNIYDLIIFLIFLQVFKPIL 245
           NG N + I +N    ENVK L  ++  H +VA +  SR  N  DL+IF+I  Q  + +L
Sbjct: 56  NGENMVDI-IN-KKHENVKYLKGVALPHNIVAYSDLSRVINSADLLIFIIPSQYLESVL 112


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 349,963,024
Number of Sequences: 1657284
Number of extensions: 5809170
Number of successful extensions: 9174
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 9076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9172
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17349842203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)