Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0064.Seq
         (403 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051563-1|AAK92987.1|  634|Drosophila melanogaster GH21160p pro...    29   1.8  
AE013599-1301|AAM68737.1|  634|Drosophila melanogaster CG30023-P...    29   1.8  
AE014297-3099|AAN13902.1|  595|Drosophila melanogaster CG31164-P...    27   9.4  

>AY051563-1|AAK92987.1|  634|Drosophila melanogaster GH21160p
           protein.
          Length = 634

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 10  SVLSANF*SSQSSRPSGKRRETVPTPYKFELTXTLSR 120
           SV S +F S   S+P+ + R T PTP K  L  +L R
Sbjct: 534 SVKSLDFDSENESKPATETRTTRPTPPKKPLRLSLQR 570


>AE013599-1301|AAM68737.1|  634|Drosophila melanogaster CG30023-PA
           protein.
          Length = 634

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 10  SVLSANF*SSQSSRPSGKRRETVPTPYKFELTXTLSR 120
           SV S +F S   S+P+ + R T PTP K  L  +L R
Sbjct: 534 SVKSLDFDSENESKPATETRTTRPTPPKKPLRLSLQR 570


>AE014297-3099|AAN13902.1|  595|Drosophila melanogaster CG31164-PA
           protein.
          Length = 595

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 138 LSTLHAVVAI-ATNSRSTNIYDLII--FLIFLQVFKPILPYCM*LKLRSGLTFNPY 296
           L  L AV AI    S  +N Y L I  F +F+ +F  +       KLRS LT  PY
Sbjct: 340 LINLRAVRAILGQTSPISNRYSLSIQHFFVFMSLFGTLFGGFFDCKLRSFLTKRPY 395


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,532
Number of Sequences: 53049
Number of extensions: 255961
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1170601320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)