Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0064.Seq
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    28   2.2  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z48543-2|CAA88433.2|  478|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF047661-2|AAK71389.1|  886|Caenorhabditis elegans Hypothetical ...    27   5.0  
AF047661-1|AAK71388.2|  915|Caenorhabditis elegans Hypothetical ...    27   5.0  
AF003151-14|AAT68900.1|  399|Caenorhabditis elegans Hypothetical...    26   8.8  

>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +3

Query: 114 IENVKKLALSTLHAVVAIATNSRSTNIY 197
           IEN+KKL ++T+  +++    SRSTNI+
Sbjct: 289 IENIKKLPVTTIFKMMSTVA-SRSTNIF 315


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 182 INKHLRFDYIFNIFTSFQADIALLHVA*AKIRFNF*PIPLDNS 310
           IN  + FD + N FT+FQ    L+H+   ++R ++  +P+ N+
Sbjct: 263 INMDVSFDKLMNGFTAFQPLERLMHL--VELRRSYIIVPVSNT 303


>Z48543-2|CAA88433.2|  478|Caenorhabditis elegans Hypothetical
           protein C18D1.2 protein.
          Length = 478

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 120 NVKKLALSTLHAVVAIATNSRSTNIYDLIIFLIFLQVF 233
           N   + +STLH   A   + +STN+ D ++  I  + +
Sbjct: 37  NFTIICMSTLHNFTATEASEKSTNVLDFMLHKILQKTY 74


>AF047661-2|AAK71389.1|  886|Caenorhabditis elegans Hypothetical
           protein M70.3b protein.
          Length = 886

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +3

Query: 114 IENVKKLALSTLHAVVAIATNSRSTNI 194
           IEN+KKL ++T+  +++    SRSTNI
Sbjct: 278 IENIKKLPVTTIFKLMSTVA-SRSTNI 303


>AF047661-1|AAK71388.2|  915|Caenorhabditis elegans Hypothetical
           protein M70.3a protein.
          Length = 915

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +3

Query: 114 IENVKKLALSTLHAVVAIATNSRSTNI 194
           IEN+KKL ++T+  +++    SRSTNI
Sbjct: 307 IENIKKLPVTTIFKLMSTVA-SRSTNI 332


>AF003151-14|AAT68900.1|  399|Caenorhabditis elegans Hypothetical
           protein D1007.10b protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 178 LLVAIATTACSVLSASFLTFSIAXKLTRICMELEPFLFV 62
           LLV   +    +L A F TF     LTR   E  PFL V
Sbjct: 60  LLVRNDSLDLDILKAKFTTFFSKRYLTRFLSEQVPFLHV 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,188,110
Number of Sequences: 27780
Number of extensions: 141522
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)