Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0063.Seq
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   1.0  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    28   1.4  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   3.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   4.1  

>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 570 PIGPKSAKSLINQKNRPEIGLSVVPVWNKSP 662
           P   K  KS  ++K R    +S+V VWN+SP
Sbjct: 42  PFTLKPIKSTSDRKRRRHSRMSIVNVWNQSP 72


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 606 QKNRPEIGLSVVPVWNKSPLLKNVDPTSXGGKTVYXGVAH 725
           QK      +S+  +W ++  LK V+P + G  T +  V +
Sbjct: 225 QKKNAGFNVSITDLWGRALALKLVNPLTGGANTTFSSVTN 264


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 644 WNNTQPYLGSILLIYKGFCRFRPYWLKNELI 552
           + N   YL S+  I +    + PYWL N+LI
Sbjct: 96  FKNFLHYLKSLFPIIEWLPNYNPYWLINDLI 126


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 312 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 476
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 477 SCA 485
           S A
Sbjct: 232 SDA 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,980
Number of Sequences: 5004
Number of extensions: 57054
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)