Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0063.Seq
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0137 - 14759337-14759508,14759616-14759813,14759917-147601...    31   1.1  
07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836...    31   1.4  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.9  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   4.4  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   4.4  

>03_03_0137 -
           14759337-14759508,14759616-14759813,14759917-14760116,
           14760197-14760310,14760386-14760572,14760984-14761225,
           14762326-14762424,14762505-14762836,14762931-14763039
          Length = 550

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +3

Query: 570 PIGPKSAKSLINQKNRPEIGLSV 638
           P+  KS K LIN+ N PEIGLSV
Sbjct: 482 PLLQKSRKRLINRVNLPEIGLSV 504


>07_01_0991 -
           8358309-8358338,8359115-8359393,8359964-8360092,
           8360317-8360598,8361400-8361525,8363490-8363870
          Length = 408

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/80 (23%), Positives = 35/80 (43%)
 Frame = +3

Query: 222 CRHKINITCILSFNVYRVKKKKKTRGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNL 401
           C H  ++T +L        +K + +G  +   +P       H  +++ + +G    +  +
Sbjct: 145 CGHDAHVTMLLGAAKLLQSRKDELKGTIKLVFQPAEEG---HAGAYHVLESGLLDDVSVI 201

Query: 402 IALQHIPLSPAGVIAKRPAP 461
             L  IP  P GV+A RP P
Sbjct: 202 FGLHVIPNLPVGVVASRPGP 221


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 336 ITIHWPSFYNVV-TGKTLALPNLIALQH 416
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 398 LNRLAAHPPFASWRNSEEARTDRPSQQLRXLNG 496
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 398 LNRLAAHPPFASWRNSEEARTDRPSQQLRXLNG 496
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,665,925
Number of Sequences: 37544
Number of extensions: 398911
Number of successful extensions: 889
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)