Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0062.Seq
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 118 5e-28
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 89 3e-19
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 85 4e-18
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 85 6e-18
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 82 4e-17
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 76 3e-15
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 74 1e-14
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 72 4e-14
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 71 1e-13
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 66 2e-12
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 65 5e-12
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 65 7e-12
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 58 6e-10
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 34 0.014
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ... 29 0.41
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.6
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce... 27 2.2
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 26 2.9
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.8
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 3.8
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 26 3.8
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 25 5.0
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 6.7
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc... 25 6.7
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.7
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 25 6.7
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 8.8
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 118 bits (284), Expect = 5e-28
Identities = 45/80 (56%), Positives = 62/80 (77%)
Frame = +1
Query: 19 REEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTK 198
++ P +GF V L+ + ++FEWEV I GP DTLY+GG+F A + FP DYP PP ++F T+
Sbjct: 18 QKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTE 77
Query: 199 VWHPNVYENGDLCISILHPP 258
+WHPNV+ NG++CISILHPP
Sbjct: 78 IWHPNVHPNGEVCISILHPP 97
Score = 55.2 bits (127), Expect = 5e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 252 PPVDDPQSGELPCERWNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMYR 404
PP DD E ERW P S T+L+SVIS+L+ PN SPAN+DA+ +R
Sbjct: 96 PPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFR 146
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 89.4 bits (212), Expect = 3e-19
Identities = 36/77 (46%), Positives = 51/77 (66%)
Frame = +1
Query: 19 REEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTK 198
RE P+ RV L+ +DNLF W GP D++Y GG F +KFP DYP+ PP+I F T+
Sbjct: 20 REHPIPDIRVNLV-DDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTR 78
Query: 199 VWHPNVYENGDLCISIL 249
++HPN G++C++IL
Sbjct: 79 IYHPNFDSEGNVCLAIL 95
Score = 29.5 bits (63), Expect = 0.31
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 297 WNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMYRRWRDSKGK 428
+ P+ +R+VL ++ LL EPN P + YR R S K
Sbjct: 100 FKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDK 143
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 85.4 bits (202), Expect = 4e-18
Identities = 35/79 (44%), Positives = 50/79 (63%)
Frame = +1
Query: 22 EEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKV 201
E +G ED+ F W+ I GP T ++GG + A +KFP DYP PP+++F +
Sbjct: 19 ENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEF 78
Query: 202 WHPNVYENGDLCISILHPP 258
+HPNVY++G +CISILH P
Sbjct: 79 FHPNVYKDGTVCISILHAP 97
Score = 62.5 bits (145), Expect = 4e-11
Identities = 33/71 (46%), Positives = 45/71 (63%)
Frame = +3
Query: 255 PVDDPQSGELPCERWNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMYRRWRDSKGKDK 434
P DDP E ERW+P QSV +LLSV+S+L EPN S AN+DA M WR+ + +
Sbjct: 97 PGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKM---WREDR---E 150
Query: 435 EYENIIRKQAQ 467
EY ++R+ A+
Sbjct: 151 EYCRVVRRLAR 161
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 85.0 bits (201), Expect = 6e-18
Identities = 30/66 (45%), Positives = 42/66 (63%)
Frame = +1
Query: 64 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCIS 243
D+LF W+ I GP D+ Y GG F + FP DYP+ PP + F T+++HPN+ NG +C+
Sbjct: 28 DDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLD 87
Query: 244 ILHPPW 261
IL W
Sbjct: 88 ILRDQW 93
Score = 33.5 bits (73), Expect = 0.019
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 291 ERWNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMYR 404
++W+P ++ VLLS+ SLL +PN P + + +Y+
Sbjct: 91 DQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYK 128
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 82.2 bits (194), Expect = 4e-17
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +1
Query: 61 EDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCI 240
+ NL W I GP DT Y+G FK M FP +YPYSPP+I F + +WHPNV +G++C+
Sbjct: 55 DSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICL 114
Query: 241 SILHPPW 261
IL W
Sbjct: 115 DILKDKW 121
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +3
Query: 291 ERWNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMYRR 407
++W+ +V+T+LLS+ SLL EPN SP N A+ ++ +
Sbjct: 119 DKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSK 157
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 76.2 bits (179), Expect = 3e-15
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = +1
Query: 64 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCIS 243
DN+ W I GP DT ++ G FK + F YP PP ++F++ ++HPNVY NG+LC+
Sbjct: 31 DNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLD 90
Query: 244 ILHPPW 261
IL W
Sbjct: 91 ILQNRW 96
Score = 48.8 bits (111), Expect = 5e-07
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +3
Query: 294 RWNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMYRRWRDSKGKDKEYENIIRKQAQ 467
RW+PT V +L S+ SLLN+PN SPAN +A+ ++R KEY +RK +
Sbjct: 95 RWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRE------NKKEYVRRVRKTVE 146
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 73.7 bits (173), Expect = 1e-14
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +1
Query: 61 EDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCI 240
EDNL +++ + GP + Y+GG F + P +YP PP++RFLTK++HPNV + G +C+
Sbjct: 28 EDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICL 87
Query: 241 SILHPPW 261
S L W
Sbjct: 88 STLKKDW 94
Score = 34.3 bits (75), Expect = 0.011
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 297 WNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMYR 404
W+P +RTVLLS+ +L+ PN P + D + +++
Sbjct: 94 WSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWK 129
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 72.1 bits (169), Expect = 4e-14
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = +1
Query: 67 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCISI 246
+L W+V I G P T ++GG +K M FP +YP PP RF ++HPNVY +G +C+SI
Sbjct: 37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 96
Query: 247 LH 252
L+
Sbjct: 97 LN 98
Score = 43.2 bits (97), Expect = 2e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 291 ERWNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMYRRWRDSKGKDK-EYENIIRKQAQ 467
E W P +++ +LL + LL++PN SPA +A M++ KDK EYE +R QA+
Sbjct: 101 EGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFK-------KDKVEYEKRVRAQAR 153
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 70.9 bits (166), Expect = 1e-13
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +1
Query: 55 LGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYE-NGD 231
L DN+ E+ V GP +T Y GG +K H++ P +YP+ PSI F+ +++HPN+ E +G
Sbjct: 24 LVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGS 83
Query: 232 LCISILHPPW 261
+C+ +++ W
Sbjct: 84 VCLDVINQTW 93
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 66.5 bits (155), Expect = 2e-12
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +1
Query: 46 VKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNV-YE 222
+K + + ++F W+ I GP +T Y+GG + + YP SPPS+ F TK+ HPN+ +
Sbjct: 26 LKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWT 85
Query: 223 NGDLCISILHPPW 261
NG++C+ IL W
Sbjct: 86 NGEVCMDILKTHW 98
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +3
Query: 297 WNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMYR 404
W+P S+++ L++ISLL+ + SP NVDA+ + R
Sbjct: 98 WSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLR 133
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 65.3 bits (152), Expect = 5e-12
Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +1
Query: 19 REEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTK 198
++ PVE K E N+ EW I GPPDT Y+GG + + FPPDYP+ PP+IR +T
Sbjct: 18 QKNPVELVDAKPATE-NILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP 76
Query: 199 VWHPNVYENGDLCISI--LHP 255
N LC+S HP
Sbjct: 77 --SGRFQTNTRLCLSFSDFHP 95
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 64.9 bits (151), Expect = 7e-12
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +1
Query: 97 GPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNV-YENGDLCISILHPPW 261
GP T Y+GGYF ++ P DYP+ PP + F TK++HPNV + G +C+ IL W
Sbjct: 42 GPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQW 97
Score = 28.7 bits (61), Expect = 0.54
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +3
Query: 291 ERWNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMY 401
++W+P ++++ L+S+ SLL P +P + + +Y
Sbjct: 95 DQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVY 131
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 58.4 bits (135), Expect = 6e-10
Identities = 20/54 (37%), Positives = 35/54 (64%)
Frame = +1
Query: 100 PPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCISILHPPW 261
P + Y+GG FK ++ +YP+ PP ++ L K++HPN+ G++C++IL W
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDW 113
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 297 WNPTQSVRTVLLSVISLLNEPNTFSPANVDAS 392
WNP ++ ++L+ + L PN P N +A+
Sbjct: 113 WNPVLNLNSILVGLQFLFLSPNAEDPLNKEAA 144
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 33.9 bits (74), Expect = 0.014
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 70 LFEWEVAIFGPPDTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNV 216
L +W I GP ++++ + + +YP +PP + F++++ P V
Sbjct: 38 LSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGV 86
>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 400
Score = 29.1 bits (62), Expect = 0.41
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 25 EPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKAHMKF 150
E ++G +K + +WEVAIFG P G K + +F
Sbjct: 186 EEIDGIGMKTVANKLNADWEVAIFGEPTENKLGVGHKGNFRF 227
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 418 ESRQRRYITLASTFAGLKVFGSLRSEITER 329
E + R+Y +TF+ LK FG L S+ R
Sbjct: 67 EMKARKYTETVATFSSLKPFGILDSQTINR 96
>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +3
Query: 321 TVLLSVISLLNEPNTFSPANVDASVMYRRWRDSKGKDKEYENIIRKQAQVARMEAE 488
T L+ + +L + M WRD G+++ ++NI+ +V M+ E
Sbjct: 89 TKLMKIDEVLEKAKIAKAKGSTRFCMGSAWRDLNGRNRTFKNILEIIKEVRSMDME 144
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 330 LSVISLLNEPNTFSPANVDASVMYRRWRDSKGK 428
L VI P F ANV VM +WR S GK
Sbjct: 227 LWVIGYSQSPRVFRAANVKPEVMNFKWR-SNGK 258
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 175 PSIRFLTKVWHPNVYENGDLCISI 246
PS+ LTKV HP + G++ + I
Sbjct: 395 PSVSLLTKVLHPKYHLIGNVAVQI 418
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -1
Query: 101 GPKIATSHSNRLSSPSN--LTRKPST 30
GP+ TS SN +SP+N T KPST
Sbjct: 230 GPRPTTSASNTNTSPANGAPTNKPST 255
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 336 VISLLNEPNTFSPANVDASVMY---RRWRDSKGKDKEYENIIRKQAQVARMEAEKE 494
+++ ++ N P++ D + Y R WR S K YE II + R + + E
Sbjct: 281 LVNTEDDENGIKPSDEDFLLKYMMNRGWRTSNTKQPSYEEIIDEVDAENRFDEDAE 336
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 113 SVSGGPKIATSHSNRLSSPSNLTRKPSTGSSRAEF 9
+V PK +T S+P++ TR +GSS E+
Sbjct: 45 TVLNNPKQSTVSRKSFSAPTSPTRNKRSGSSSQEY 79
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 113 SVSGGPKIATSHSNRLSSPSNLTRKPSTGSSRAEF 9
S+ GP + TS + +SS + T +PS+ +S ++F
Sbjct: 35 SIFDGPGLGTSIPSSVSSFHHQTLRPSSDASVSQF 69
>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 231 SLHIDSPPPVDDPQSGELPCERWNPTQSVRTVL 329
S +ID PPPV + C+++ P SV L
Sbjct: 73 SSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFL 105
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 141 VCLEVSTLI--KCIRRSEDCHFPLK*IVLS*QFNTETFYRFFSC 16
+CL +S +CI RS DC+ P I FN+ F SC
Sbjct: 250 LCLPISVFNTHRCIERSTDCNCP---ICGEYMFNSRERVIFLSC 290
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 163 PYSPPSIRFLTKVWHPNVYENGDLCISILHPPWMILSLANCPANVGTLH 309
P+ S+ L+ N +ENGDL + P + S P+ VGT +
Sbjct: 385 PFGHTSVLSLSVPNASNKHENGDLTSPLGVPSMVSASTNAAPSPVGTFN 433
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 269 SVWRTALRTLEPYTIGSHRTPLCNLTPQRAEHLQ 370
S RT++ P T+GS L N P+R+ ++
Sbjct: 43 STARTSIARRPPSTVGSQTGSLVNAPPKRSSGIE 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,841
Number of Sequences: 5004
Number of extensions: 50068
Number of successful extensions: 193
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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