Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0062.Seq
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.7  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   9.9  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 376 AGLKVFGSLRSEITERSTVRTDCVGFQR 293
           +GLKV   +  ++ ER   +TD V F++
Sbjct: 118 SGLKVIACIGEKLEEREAGKTDEVVFRQ 145


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 115 YQGGYFKAHMKFPPDYPY 168
           + G  F+  +KF P YP+
Sbjct: 305 FDGRLFEFPIKFVPSYPF 322


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/33 (24%), Positives = 14/33 (42%)
 Frame = -1

Query: 224 FSYTFGCQTLVKNLMDGGEYG*SGGNFMCALKY 126
           F + +     +  L   G YG   GN  C++ +
Sbjct: 21  FVWIYALSLSLPPLFGWGSYGPEAGNVSCSVSW 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,796
Number of Sequences: 438
Number of extensions: 3832
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)