Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0059.Seq
         (895 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       28   0.086
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.9  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 0.086
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = -1

Query: 628 VRQAFNRHTTSKNHGENDSHCQHSAMLIHPSGKLFNPQKSKPKTGRQETITLAPGLTARL 449
           V Q+     T K+ G+ D H +H        G   + +K+K    + +    +PG T   
Sbjct: 70  VIQSVPHPETEKDWGDGDKHDRHERHFESSFGNNLHSEKAKFNESKWQDSGESPGFTTER 129

Query: 448 NAQPSRRGSTEP 413
           N +   +  T P
Sbjct: 130 NWEIREKPYTPP 141


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -1

Query: 706 PSFXSRFLXQRXSTFSKLPATHIAGNVRQAFNRHTTSKNHGENDSHCQHSAMLIHPSGKL 527
           PSF SR    +   +S  P   +AG V+QA  +    K   E+D     ++  +  S   
Sbjct: 49  PSFKSR----KPKNYSA-PIGFVAGGVQQAGKKPENVKKEDESDEEKPTTSFKLKDSSSD 103

Query: 526 FNPQKSKPKTG 494
              ++ +P  G
Sbjct: 104 SEDERPRPGGG 114


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 421  LILAAMVVHLSGPLILEQGLW 483
            +I A +++ LSG +I  +G+W
Sbjct: 1153 VIKAIIIMILSGCIIFTEGIW 1173


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -2

Query: 792 GFSQVRRCKTRPIEL*YDSL*GELGYGAPLRSXRGFCXSG 673
           GF   R  KT+   L  +   G + +   +   RG C SG
Sbjct: 832 GFDDERSLKTKMAWLKEEGFGGIMIWSVDMDDFRGSCGSG 871


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 251 ECNCRRYCVQLFPSSICNWESHFCLCPCK 337
           E  CR   V    S+IC+W  H     CK
Sbjct: 501 EFACRPGTVFHTQSNICDWPEHADREKCK 529


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -1

Query: 607 HTTSKNHGENDSHCQHSAMLIHPSGKLFNPQKSKPKT 497
           H    +H     H Q    ++H +  + NPQ   P+T
Sbjct: 86  HPQLHSHHGPPIHHQIRPPILHDTQPMCNPQLQVPRT 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,950
Number of Sequences: 336
Number of extensions: 5511
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)