Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0059.Seq
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   3.6  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    27   4.8  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   4.8  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   6.3  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    26   6.3  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    26   8.3  

>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 583 ENDSHCQHSAMLIHPSGKLFNPQKSKPKTGRQETITLAP 467
           +N  H + S   I PSG  F+P    P++  Q+ +TL+P
Sbjct: 387 DNLEHMRQSC--ISPSGTNFSPSCYSPESLMQQPLTLSP 423


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +1

Query: 28  GYGNATSCIAYHGGACYVGNA*VKWATVEWLGCMDMLSGGNFADGSCCHSLAKFMALCRC 207
           G+ N   C+++H  A Y+        T  W    D+ +GG     +  HS     ALC  
Sbjct: 485 GHQNDVDCVSFHPNAAYLATGSSDHTTRMW----DVRTGGTVRVFNAHHS--PVSALCMS 538

Query: 208 GRGIDI 225
             G+ +
Sbjct: 539 ADGLSL 544


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 367 SFIANLLAIPLVTFITVPLILAAMVVHLSGPLILEQGLWFLAD 495
           S+I N L  P++ +I        ++ H+S PL    G W   D
Sbjct: 497 SYINNALIRPIIAYINSTRTFIPILCHVSKPLSDFDGSWTFYD 539


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = +1

Query: 352 GISLTSFIANLLAIPLVTFITVPLILAAMVVHLSGPLILEQGLWFL 489
           G+ LTS I+ L  IPL   +  PLI  A    L   L+LE  + FL
Sbjct: 199 GLVLTSLISWLREIPLDKVMASPLIELAF-RSLDDDLLLEDAVEFL 243


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -2

Query: 204 AAESHKLCERMATGSISKIAARQHIHTSQPLHCRPLNLSI-PHVASATMVRNAGGC 40
           AAE  K+ E++   ++S   +R  +H +    CR     I PH        + G C
Sbjct: 2   AAEQRKIIEQLMGSNLSNFTSRGLVHFTDRKVCRSFLCGICPHDIFTNTKMDLGPC 57


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 497 RSARNHNPCSRINGPLKCTTIAARINGTVINVTKGIAN-RFAINEV 363
           R+A  +  C RI GPL    +A       + V     N ++ +N++
Sbjct: 246 RAAERNVSCFRIEGPLSSFKVAEEFLKMALEVDNNFGNTKYCLNQI 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,887,212
Number of Sequences: 5004
Number of extensions: 84333
Number of successful extensions: 236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)