Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0059.Seq
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0323 - 16380329-16380742                                         30   2.9  
04_01_0066 - 652339-652382,652641-653593,654492-654568,655812-65...    30   2.9  
05_04_0072 - 17659002-17659664                                         29   3.8  
10_06_0080 + 10441055-10443856                                         29   6.6  
03_05_0625 - 26225201-26225879,26226706-26227553                       29   6.6  

>11_04_0323 - 16380329-16380742
          Length = 137

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -3

Query: 299 RWMRETTARNTGGSCTQDRETTDTKISMPRPQRQRAINFAREWQQDPSAKLP 144
           RW R   AR  GGSC+  R+  D ++    P        +  W   PS  LP
Sbjct: 70  RWRRLGEARRAGGSCSATRDGADDEVQRHIP--------SLVWSSPPSLPLP 113


>04_01_0066 -
           652339-652382,652641-653593,654492-654568,655812-655917,
           656200-656261,656676-656784,657015-657385
          Length = 573

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 257 NCRRYCVQLFPSSICNWESHFCLCPCKSS 343
           N    C+   P SI    +HFC CPC SS
Sbjct: 12  NSHYECINRPPLSIRTNLTHFCSCPCDSS 40


>05_04_0072 - 17659002-17659664
          Length = 220

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +3

Query: 255 ATAAGIACSCFPHPSATGNHTSAYARA 335
           A AA  ACSC P   A G  T AY  A
Sbjct: 151 AAAAAAACSCKPAAPAAGGSTMAYLAA 177


>10_06_0080 + 10441055-10443856
          Length = 933

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 30  LRECNLLHCVPWWRLLRGE 86
           LR+C+ +H + WW  +RGE
Sbjct: 910 LRQCHRIHHMQWWYSVRGE 928


>03_05_0625 - 26225201-26225879,26226706-26227553
          Length = 508

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 266 RYCVQLFPSSICNWESHFCLCPCKSSYFMALV-*PRLLQIY 385
           +Y V   P+   N  SHFCL   +   ++AL+  PR LQ++
Sbjct: 290 KYQVIKMPTVRSNGHSHFCLGRSEKGVYLALITKPRSLQVW 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,704,868
Number of Sequences: 37544
Number of extensions: 702803
Number of successful extensions: 1775
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)