Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0059.Seq
         (895 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL163202-1|CAB90395.1|  396|Homo sapiens PRED65 protein.               33   1.1  
U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated pro...    30   9.9  
BC126107-1|AAI26108.1| 2627|Homo sapiens telomerase-associated p...    30   9.9  
AB073346-1|BAD38631.1|   48|Homo sapiens putative protein produc...    30   9.9  

>AL163202-1|CAB90395.1|  396|Homo sapiens PRED65 protein.
          Length = 396

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
 Frame = -2

Query: 438 HRGEDQRNRDKCHQGNC**ICNKRGQTNAMKYDDLHGHKQKCDSQLQMDEGNNCTQYRRQ 259
           H GE   N +KC  G      +   Q N +  ++ H   Q+C    +     N     + 
Sbjct: 225 HAGEKPYNCEKC--GKAFYCSSNLIQNNIVHAEEKHYKCQECGKAFKKSLDLNV---HKI 279

Query: 258 LHSGQGNH*YQNINAATAAAESHKLCERMATGSISKIAARQH--IHTSQPLH 109
           +HSG+  + Y+     T + E    CE    G     +  +H  +HT + L+
Sbjct: 280 IHSGEKPYRYEECGKITHSGEESYKCEECGKGFYCSSSLTKHMIVHTEEKLY 331


>U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated
           protein TP-1 protein.
          Length = 2627

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 471 ARVMVSCRPVFGLLFWGLKSLPEGWINIAECWQWLS 578
           A  + +CRP     F  +  LP  WI +AE +Q L+
Sbjct: 312 AAFLPACRPHLRRYFCAIVQLPSDWIQVAELYQSLA 347


>BC126107-1|AAI26108.1| 2627|Homo sapiens telomerase-associated
           protein 1 protein.
          Length = 2627

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 471 ARVMVSCRPVFGLLFWGLKSLPEGWINIAECWQWLS 578
           A  + +CRP     F  +  LP  WI +AE +Q L+
Sbjct: 312 AAFLPACRPHLRRYFCAIVQLPSDWIQVAELYQSLA 347


>AB073346-1|BAD38631.1|   48|Homo sapiens putative protein product
           of HMFN0128 protein.
          Length = 48

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 239 FPCPECNCRRYCVQLFPSSICNW 307
           +PCP C  R  C  LFP S+  W
Sbjct: 5   YPCPRCALRLECRSLFPRSLELW 27


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,141,464
Number of Sequences: 237096
Number of extensions: 3779947
Number of successful extensions: 9116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9107
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)