Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0059.Seq
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006629-7|ABF71723.1| 402|Caenorhabditis elegans Hypothetical ... 31 1.1
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe... 29 3.4
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe... 29 3.4
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty... 29 3.4
Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical p... 29 5.9
Z67735-3|CAA91531.3| 513|Caenorhabditis elegans Hypothetical pr... 28 7.8
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 28 7.8
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 28 7.8
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 28 7.8
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 28 7.8
>AC006629-7|ABF71723.1| 402|Caenorhabditis elegans Hypothetical
protein F12E12.11 protein.
Length = 402
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 445 HLSGPLILEQGLWFLADRSLAYFSGG*RVCRKGGSTLL 558
H++ P+ + Q + FLADR+++ + G + GGS+LL
Sbjct: 350 HMAQPIEIAQVIAFLADRTMSSYIIGQSIIADGGSSLL 387
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 445 HLSGPLILEQGLWFLADRSLAYFSGG*RVCRKGGSTLL 558
H++ P+ + Q + FLADR+++ + G + GGS+L+
Sbjct: 70 HMAQPVEIAQVIAFLADRTMSSYIIGQSIIADGGSSLV 107
>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
protein 19,isoform a protein.
Length = 1783
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = -3
Query: 497 RSARNHNPCSRINGPLKCTTIAARINGTVINVTKGIANRFAINEVRLMP*NMTICTGISR 318
R R N + ++C +A + G ++ VT + FAI V+L +C +S+
Sbjct: 902 RPLRAINRAKGLKHVVQCVIVAVKTIGNIMLVTFMLQFMFAIIGVQLFKGTFFLCNDLSK 961
Query: 317 SVIPSCR 297
CR
Sbjct: 962 MTEAECR 968
>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
protein 19,isoform b protein.
Length = 1877
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = -3
Query: 497 RSARNHNPCSRINGPLKCTTIAARINGTVINVTKGIANRFAINEVRLMP*NMTICTGISR 318
R R N + ++C +A + G ++ VT + FAI V+L +C +S+
Sbjct: 902 RPLRAINRAKGLKHVVQCVIVAVKTIGNIMLVTFMLQFMFAIIGVQLFKGTFFLCNDLSK 961
Query: 317 SVIPSCR 297
CR
Sbjct: 962 MTEAECR 968
>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
calcium channelalpha 1 subunit protein.
Length = 1783
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = -3
Query: 497 RSARNHNPCSRINGPLKCTTIAARINGTVINVTKGIANRFAINEVRLMP*NMTICTGISR 318
R R N + ++C +A + G ++ VT + FAI V+L +C +S+
Sbjct: 902 RPLRAINRAKGLKHVVQCVIVAVKTIGNIMLVTFMLQFMFAIIGVQLFKGTFFLCNDLSK 961
Query: 317 SVIPSCR 297
CR
Sbjct: 962 MTEAECR 968
>Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical
protein R107.6 protein.
Length = 1020
Score = 28.7 bits (61), Expect = 5.9
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Frame = -1
Query: 742 RLTIGRIG-LRGPPSFXSRFLXQR-XSTFSKLPATHIAGNVRQAFN-RHTTSKNHGENDS 572
+L+ G IG +R P+ S+FL QR S T +A +V + N R T++ + D+
Sbjct: 281 KLSAGSIGGIRNAPNISSKFLAQRSASAIDTKQVTRMATSVSRTPNIRPMTTRTLSKIDT 340
Query: 571 HCQHSAMLIHPSGKLFNPQKSKPKTGRQETITLAPGLTARLNAQPSRRGSTE 416
+ P+ + S R T PG +R + P R +TE
Sbjct: 341 -SPGGSKFARPTVGALGSRTSSNLRARGSVPTSQPG--SRNGSPPRRPSATE 389
>Z67735-3|CAA91531.3| 513|Caenorhabditis elegans Hypothetical
protein C15A7.2 protein.
Length = 513
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 513 FWGLKSLPEGWINIAECWQWLSFSPWFLLVVWRLNAW 623
FW +K + + AE + P +LLV+WRL AW
Sbjct: 328 FWEIK-----FFDPAEVYAQSESLPAYLLVIWRLTAW 359
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = -2
Query: 378 CNKRGQTNAMKYDDLHGHKQKCDSQLQMDEGNNCTQYRRQLHSG 247
C +RG N D H D +E N C HSG
Sbjct: 171 CTRRGHENMQSSTDFHDDVHLVDPTFFANEDNKCRSGYTMCHSG 214
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = -2
Query: 378 CNKRGQTNAMKYDDLHGHKQKCDSQLQMDEGNNCTQYRRQLHSG 247
C +RG N D H D +E N C HSG
Sbjct: 171 CTRRGHENMQSSTDFHDDVHLVDPTFFANEDNKCRSGYTMCHSG 214
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = -2
Query: 378 CNKRGQTNAMKYDDLHGHKQKCDSQLQMDEGNNCTQYRRQLHSG 247
C +RG N D H D +E N C HSG
Sbjct: 171 CTRRGHENMQSSTDFHDDVHLVDPTFFANEDNKCRSGYTMCHSG 214
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = -2
Query: 378 CNKRGQTNAMKYDDLHGHKQKCDSQLQMDEGNNCTQYRRQLHSG 247
C +RG N D H D +E N C HSG
Sbjct: 171 CTRRGHENMQSSTDFHDDVHLVDPTFFANEDNKCRSGYTMCHSG 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,402,828
Number of Sequences: 27780
Number of extensions: 521164
Number of successful extensions: 1423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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