Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0059.Seq
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.93 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   8.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   8.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   8.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   8.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 342 HISWH*SDLVYCKSISNSLGDIYH 413
           +ISWH  +LV   S   + G +YH
Sbjct: 252 YISWHQKELVRRDSRRKNYGGVYH 275


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 38  MQPPALRTMVALATWGMLKLSGRQWSGWDVWICCLAAIL 154
           + PPA+   +   TW +  +    W   D+ + C A+IL
Sbjct: 90  VMPPAVLLQLTGGTWELGPMLCDSWVSLDI-LLCTASIL 127


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 375 NKRGQTNAMKYDDLHGHKQKCDSQLQMDEGNNCTQYRRQ 259
           N+  +    +Y+ LH  K+K   +    +  +C++ R Q
Sbjct: 242 NREYKEKDRRYEKLHNEKEKLLEERTSRKRYSCSREREQ 280


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 429 EDQRNRDKCHQG 394
           ED RN+  CH G
Sbjct: 488 EDLRNKKSCHSG 499


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 429 EDQRNRDKCHQG 394
           ED RN+  CH G
Sbjct: 488 EDLRNKKSCHSG 499


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 429 EDQRNRDKCHQG 394
           ED RN+  CH G
Sbjct: 488 EDLRNKKSCHSG 499


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 351  MKYDDLHGHKQKCDSQLQMDEGNNCTQYRR 262
            + YD+    K K D  + +  G NC +  R
Sbjct: 1255 LSYDEKMDQKPKMDFNVDIRYGKNCGKGER 1284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,115
Number of Sequences: 438
Number of extensions: 6853
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)