Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0057.Seq
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 151 1e-37
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 151 1e-37
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 45 9e-06
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 27 1.5
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 27 1.5
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 26 3.5
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 26 4.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 4.6
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 6.1
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 25 8.1
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 8.1
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 151 bits (365), Expect = 1e-37
Identities = 67/89 (75%), Positives = 79/89 (88%)
Frame = -1
Query: 520 REPPREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 341
R RE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQ
Sbjct: 14 RNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQ 73
Query: 340 LIKNGKKVTAFVPRDGCLNHIEENDEVLV 254
LIKNGKKVTAFVP DGCLN ++ENDEVL+
Sbjct: 74 LIKNGKKVTAFVPHDGCLNFVDENDEVLL 102
Score = 67.3 bits (157), Expect = 2e-12
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = -3
Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 132
+GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 103 SGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 558 MGKPRGIRTARKHVNHR 508
MGKP G+ ARK NHR
Sbjct: 1 MGKPAGLNAARKLRNHR 17
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 151 bits (365), Expect = 1e-37
Identities = 67/89 (75%), Positives = 79/89 (88%)
Frame = -1
Query: 520 REPPREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 341
R RE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQ
Sbjct: 14 RNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQ 73
Query: 340 LIKNGKKVTAFVPRDGCLNHIEENDEVLV 254
LIKNGKKVTAFVP DGCLN ++ENDEVL+
Sbjct: 74 LIKNGKKVTAFVPHDGCLNFVDENDEVLL 102
Score = 67.3 bits (157), Expect = 2e-12
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = -3
Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 132
+GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 103 SGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 558 MGKPRGIRTARKHVNHR 508
MGKP G+ ARK NHR
Sbjct: 1 MGKPAGLNAARKLRNHR 17
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 44.8 bits (101), Expect = 9e-06
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = -1
Query: 433 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 254
G+ +G+ V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103
Query: 253 RDSVVKVTPSVTF 215
R + P V +
Sbjct: 104 RGGRAQDCPGVQY 116
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 349 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVRDSVVK 236
R +LI+ GK VT F G ++ +DE +R++V+K
Sbjct: 124 RQELIRTGK-VTPFRNLSGLQKEVDFDDESSIREAVIK 160
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 11 IRHELFFCCTQYLLCTRILH 70
+RH +FFCC + L +RI++
Sbjct: 307 LRHSIFFCCLRCLSSSRIVN 326
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 497 SLFTRWFTC-LRAVRIPRGLPIWIARH 574
SLF RWF L A R+ +G+ +W+ H
Sbjct: 256 SLFMRWFKIQLEAYRL-KGMKVWLLGH 281
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 4.6
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 HNIYYVLGFYIL*TYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTN--S 212
HN Y++ Y T K++ R +++HN W+ L F+ + YFY ++ S
Sbjct: 179 HNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTHLSAFIVF-FAVLAYFYPSSSSWVS 237
Query: 213 GNVTDGV 233
NV++ +
Sbjct: 238 SNVSNRI 244
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 546 RGIRTARKHVNHRVNSDGRTKNSRK---PTWVRNGRL 445
RG RK ++H N+D N P+W+R+ RL
Sbjct: 573 RGSNKTRKSISHSKNTDKHVGNELPQDIPSWLRSLRL 609
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -1
Query: 496 WADKEFKKAHMGTKWKANPFGGASHAKGIV 407
W D EF H K+ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 25 FFLLYTIFIMY*DFTFYELINNALPDSRSLITMYTY 132
FFL +TI +++ F ++P + LIT+ Y
Sbjct: 199 FFLSFTILLVFTSPEFANTFIRSIPSNEGLITLSGY 234
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -1
Query: 373 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVRDSVVKVTPSVTFPEF 206
+ ++ K V V + NG ++ DG L I + LV D V+ T P+F
Sbjct: 4 SDSLLKSVDVSKLDNGSTISFRAREDGFLESISSSSGKLV-DMVLDSTSKECLPKF 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,971
Number of Sequences: 5004
Number of extensions: 53564
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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