Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0057.Seq
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 150 7e-37
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 150 7e-37
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 137 7e-33
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 42 3e-04
10_08_0374 - 17312430-17312513,17312794-17313029,17313081-173132... 29 3.6
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547... 29 3.6
05_06_0209 - 26389902-26389928,26389981-26390161,26390265-263904... 29 3.6
11_04_0381 - 16999529-16999778,16999855-17000102 28 4.7
12_02_0248 + 16413295-16414394,16416511-16416762,16416839-164170... 28 6.2
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 28 6.2
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 8.2
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 150 bits (364), Expect = 7e-37
Identities = 65/85 (76%), Positives = 75/85 (88%)
Frame = -1
Query: 508 REQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 329
R QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KN
Sbjct: 18 RNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKN 76
Query: 328 GKKVTAFVPRDGCLNHIEENDEVLV 254
GKK+ AFVP DGCLN IEENDEVL+
Sbjct: 77 GKKIAAFVPNDGCLNFIEENDEVLI 101
Score = 81.0 bits (191), Expect = 6e-16
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -3
Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 132
AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 102 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 150 bits (364), Expect = 7e-37
Identities = 65/85 (76%), Positives = 75/85 (88%)
Frame = -1
Query: 508 REQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 329
R QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KN
Sbjct: 18 RNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKN 76
Query: 328 GKKVTAFVPRDGCLNHIEENDEVLV 254
GKK+ AFVP DGCLN IEENDEVL+
Sbjct: 77 GKKIAAFVPNDGCLNFIEENDEVLI 101
Score = 150 bits (364), Expect = 7e-37
Identities = 65/85 (76%), Positives = 75/85 (88%)
Frame = -1
Query: 508 REQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 329
R QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KN
Sbjct: 188 RNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKN 246
Query: 328 GKKVTAFVPRDGCLNHIEENDEVLV 254
GKK+ AFVP DGCLN IEENDEVL+
Sbjct: 247 GKKIAAFVPNDGCLNFIEENDEVLI 271
Score = 81.0 bits (191), Expect = 6e-16
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -3
Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 132
AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 272 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 77.4 bits (182), Expect = 8e-15
Identities = 35/39 (89%), Positives = 38/39 (97%)
Frame = -3
Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 138
AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 102 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 573 CRAIQMGKPRGIRTARKHVNHRVNSDGRTKNSRK 472
C ++ MGK RG+ RK HR N K +K
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKK 199
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 137 bits (331), Expect = 7e-33
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = -1
Query: 508 REQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 329
R QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+KN
Sbjct: 89 RNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKN 147
Query: 328 GKKVTAFVPRDGCLNHIEENDEVLV 254
GKK+ AFVP DGCLN I+EN+ V
Sbjct: 148 GKKIAAFVPNDGCLNFIKENEVAYV 172
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -3
Query: 254 AGFGRKGHAVGDIPGVRFKVVK 189
+GFG KGHAVGDI GVRF+VVK
Sbjct: 72 SGFGHKGHAVGDIRGVRFEVVK 93
>10_08_0374 -
17312430-17312513,17312794-17313029,17313081-17313261,
17313335-17313445,17313495-17313722,17313862-17313999,
17314159-17314375,17314452-17314564,17314919-17314921
Length = 436
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 520 REPPREQRWADKEFKKAHMGTKWKANPFGG 431
R PPR R DK +W+AN FGG
Sbjct: 19 RMPPRPTRDEDKPVLTPKRDRQWQANDFGG 48
>07_01_0716 +
5472618-5472818,5472943-5472985,5473672-5473761,
5473863-5473938,5474435-5474504,5474911-5475075,
5475261-5475404,5475547-5475651,5475876-5476022,
5476463-5476531,5476882-5476989,5477392-5477483,
5477559-5477598,5478129-5478221,5478386-5478958,
5479596-5479610
Length = 676
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 295 GCLNHIEENDEVLVRDSVVKVTPSVTFP 212
GCL H + DE+L+R V+ +P++ P
Sbjct: 513 GCLTHAQNADEILLRRGVLLSSPTLLPP 540
>05_06_0209 -
26389902-26389928,26389981-26390161,26390265-26390407,
26390480-26390588,26390839-26391023,26391428-26392082,
26392392-26392496,26392757-26392844,26392885-26392947,
26393451-26393513,26394328-26394484
Length = 591
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 519 VNHRVNSDGRTKNSRKPTWVRNGRLTLSV-VHLT 421
++H+VNSD S++P ++R G +++S+ +H T
Sbjct: 356 LSHQVNSDNGVIKSKRPCFLRIGSISVSMSIHQT 389
>11_04_0381 - 16999529-16999778,16999855-17000102
Length = 165
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 520 REPPREQRWADKEFKKAHMGTKWKANPFGG 431
R PPR R DK +W+AN FGG
Sbjct: 63 RMPPRPTRDEDKPVMTPKGDRQWQANDFGG 92
>12_02_0248 +
16413295-16414394,16416511-16416762,16416839-16417055,
16417216-16417353,16417493-16417669,16417744-16417851,
16417925-16418392,16418493-16418570,16418673-16418756
Length = 873
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 520 REPPREQRWADKEFKKAHMGTKWKANPFGG 431
R PPR R DK +W+AN FGG
Sbjct: 431 RMPPRPTRDEDKPVLTPKGDRQWQANDFGG 460
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 26 FFCCTQYLLCTRILHFMNL*TTRFPTAGHLSQCT-PMILVAPFSL 157
+FCC QY + I HF TR + ++ + T M +VA L
Sbjct: 43 YFCCKQYDIILLIAHFYRALRTRMKSVRNIQKITKAMKMVAASKL 87
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +2
Query: 101 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 250
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,489,752
Number of Sequences: 37544
Number of extensions: 387573
Number of successful extensions: 922
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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