Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0057.Seq
(583 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 163 3e-40
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 163 3e-40
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 163 3e-40
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 83 7e-16
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 47 6e-05
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 47 6e-05
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 47 6e-05
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 47 6e-05
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 47 6e-05
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 47 6e-05
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 6.8
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 163 bits (397), Expect = 3e-40
Identities = 75/89 (84%), Positives = 81/89 (91%)
Frame = -1
Query: 520 REPPREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 341
R R+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ
Sbjct: 14 RSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 73
Query: 340 LIKNGKKVTAFVPRDGCLNHIEENDEVLV 254
LIKNGKK+TAFVP DGCLN IEENDEVLV
Sbjct: 74 LIKNGKKITAFVPNDGCLNFIEENDEVLV 102
Score = 84.6 bits (200), Expect = 2e-16
Identities = 40/41 (97%), Positives = 40/41 (97%)
Frame = -3
Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 132
AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 103 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 163 bits (397), Expect = 3e-40
Identities = 75/89 (84%), Positives = 81/89 (91%)
Frame = -1
Query: 520 REPPREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 341
R R+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ
Sbjct: 14 RSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 73
Query: 340 LIKNGKKVTAFVPRDGCLNHIEENDEVLV 254
LIKNGKK+TAFVP DGCLN IEENDEVLV
Sbjct: 74 LIKNGKKITAFVPNDGCLNFIEENDEVLV 102
Score = 84.6 bits (200), Expect = 2e-16
Identities = 40/41 (97%), Positives = 40/41 (97%)
Frame = -3
Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 132
AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 103 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 163 bits (397), Expect = 3e-40
Identities = 75/89 (84%), Positives = 81/89 (91%)
Frame = -1
Query: 520 REPPREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 341
R R+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ
Sbjct: 14 RSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 73
Query: 340 LIKNGKKVTAFVPRDGCLNHIEENDEVLV 254
LIKNGKK+TAFVP DGCLN IEENDEVLV
Sbjct: 74 LIKNGKKITAFVPNDGCLNFIEENDEVLV 102
Score = 84.6 bits (200), Expect = 2e-16
Identities = 40/41 (97%), Positives = 40/41 (97%)
Frame = -3
Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 132
AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 103 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 83.0 bits (196), Expect = 7e-16
Identities = 39/40 (97%), Positives = 39/40 (97%)
Frame = -3
Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 135
AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 20 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
Score = 40.3 bits (90), Expect = 0.005
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -1
Query: 310 FVPRDGCLNHIEENDEVLV 254
FVP DGCLN IEENDEVLV
Sbjct: 1 FVPNDGCLNFIEENDEVLV 19
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 46.8 bits (106), Expect = 6e-05
Identities = 28/77 (36%), Positives = 41/77 (53%)
Frame = -1
Query: 451 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 272
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 271 NDEVLVRDSVVKVTPSV 221
+ VLV + P V
Sbjct: 105 HQIVLVEGGRTQDLPGV 121
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 46.8 bits (106), Expect = 6e-05
Identities = 28/77 (36%), Positives = 41/77 (53%)
Frame = -1
Query: 451 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 272
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 271 NDEVLVRDSVVKVTPSV 221
+ VLV + P V
Sbjct: 105 HQIVLVEGGRTQDLPGV 121
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.8 bits (106), Expect = 6e-05
Identities = 28/77 (36%), Positives = 41/77 (53%)
Frame = -1
Query: 451 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 272
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 271 NDEVLVRDSVVKVTPSV 221
+ VLV + P V
Sbjct: 105 HQIVLVEGGRTQDLPGV 121
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.8 bits (106), Expect = 6e-05
Identities = 28/77 (36%), Positives = 41/77 (53%)
Frame = -1
Query: 451 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 272
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 271 NDEVLVRDSVVKVTPSV 221
+ VLV + P V
Sbjct: 105 HQIVLVEGGRTQDLPGV 121
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.8 bits (106), Expect = 6e-05
Identities = 28/77 (36%), Positives = 41/77 (53%)
Frame = -1
Query: 451 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 272
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 271 NDEVLVRDSVVKVTPSV 221
+ VLV + P V
Sbjct: 105 HQIVLVEGGRTQDLPGV 121
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 46.8 bits (106), Expect = 6e-05
Identities = 28/77 (36%), Positives = 41/77 (53%)
Frame = -1
Query: 451 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 272
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 271 NDEVLVRDSVVKVTPSV 221
+ VLV + P V
Sbjct: 105 HQIVLVEGGRTQDLPGV 121
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 6.8
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 473 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 345
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,992,112
Number of Sequences: 237096
Number of extensions: 2048696
Number of successful extensions: 5545
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5545
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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