Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0057.Seq
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.31 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.95 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.95 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.7  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 71  FMNL*TTRFPTAGHLSQCTPMILVAPFSLCRERGETRWL 187
           +++  T  F T+   + C   ++V PFS   E  E RWL
Sbjct: 75  YLHTATNYFVTSLAFADCLVGLVVMPFSAIYEVLENRWL 113


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 236 GHAVGDIPGVRFKVVKVANVSLL 168
           GH V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 236 GHAVGDIPGVRFKVVKVANVSLL 168
           GH V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 236 GHAVGDIPGVR 204
           G AVGD+PG+R
Sbjct: 42  GSAVGDVPGLR 52


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 435 PKGLAFHFVPMWAFLNSLSA 494
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 435 PKGLAFHFVPMWAFLNSLSA 494
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 435 PKGLAFHFVPMWAFLNSLSA 494
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 376 PNSAIRKCV 350
           PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 427 SHAKGIVLEKVGVEAKQPNSAIR 359
           +H K +VLE+   ++K P S  R
Sbjct: 73  THEKKLVLERSKTKSKSPESRDR 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,516
Number of Sequences: 438
Number of extensions: 3779
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)