Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0056.Seq
         (875 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   4.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   7.3  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.6  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   9.6  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 415 PIPPIDSVAQIGSPENSSSYSGVRRKRTIRSS*PGGQPFPALLVR 549
           P P   SV ++G P+   ++  + R  + ++S P G P     +R
Sbjct: 66  PQPLHPSVPRLGHPQWPFAWGSLXRSSSPQTSAPTGPPIVRCALR 110


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -3

Query: 420 YGPRRSYPGYQKQLPFPEHPVHHGSVS 340
           YG    +PG   Q P     VHH   S
Sbjct: 114 YGSDLYFPGATSQPPTDNSHVHHHQTS 140


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 444 DRVAREQFIVFRSTQEANHTQFMTRWSTI 530
           +RV RE   +FR+    NH  ++   S I
Sbjct: 298 ERVMRELGRIFRAYCRENHASWVNHLSNI 326


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -3

Query: 456 WRPDLGNRIYRWY 418
           WR D+G  ++ W+
Sbjct: 197 WREDIGLNLHHWH 209


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 829 GKTGVKPXXKTNXSC 785
           GKTG K   KTN  C
Sbjct: 308 GKTGRKTVLKTNKYC 322


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,714
Number of Sequences: 336
Number of extensions: 4731
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)