Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0056.Seq
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386...    30   2.8  
03_05_0131 - 21107865-21108085,21108517-21108766,21110310-211105...    30   2.8  
02_01_0490 + 3541056-3542276                                           29   3.7  
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034     29   4.9  
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188...    29   6.5  
01_02_0019 + 10262685-10262909,10263014-10263076,10263155-102633...    28   8.5  

>11_06_0607 +
           25437897-25438046,25438180-25438236,25438522-25438602,
           25438720-25438777,25438888-25438991,25439064-25439115,
           25439232-25439281,25440279-25440443,25440531-25440603,
           25440714-25440846,25441146-25441203,25441411-25441458,
           25441593-25441676,25441803-25441868,25442419-25442502
          Length = 420

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 403 RPSRPIPPIDSVAQIGSPENSSSYSGVRRKRTIRSS 510
           R  RP  P  S A    P N+S +SG RR+R + SS
Sbjct: 9   RAPRPRVPAVSAAARSLPPNTSFFSGGRRRRRLLSS 44


>03_05_0131 -
           21107865-21108085,21108517-21108766,21110310-21110549,
           21111104-21111234,21114107-21114365
          Length = 366

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -3

Query: 168 VGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGD---VLNYDEVMERMI 1
           +GKQ+   GA+A+LAK++     GG D    + + P SE ++     V N +  ++R +
Sbjct: 151 LGKQLGIPGAKAHLAKSLFVVAIGGNDIINDLLLSPVSELLRSRDEIVSNLENTLKRQL 209


>02_01_0490 + 3541056-3542276
          Length = 406

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = +1

Query: 397 RVRPSRPIPPIDSVAQIGSPENSSSYSGVRRKRTIRSS*PGGQPFPALLVR 549
           R RPS P PP   VA + SP  +SS   V +     SS P G    +L  R
Sbjct: 281 RRRPSPPPPPPPQVASVDSPRMNSSGKIVFQGLERSSSSPAGSVHSSLRSR 331


>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
          Length = 760

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 243 ENDDLMRPDFNNDDYAIACCVS-PMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQV 67
           E D     DF ND+       + P+    +  F G R NL+       N G +E    ++
Sbjct: 575 EEDYWSEFDFENDEVMFPVARNNPVYFRGEFYFLGQRGNLS-----VFNPGNNE---WRI 626

Query: 66  GPKSEPIKGDVLNYDEVME 10
             K EPI+ D+  YDE  E
Sbjct: 627 LDKPEPIRADLTPYDEGKE 645


>05_04_0331 +
           20317482-20318174,20318518-20318685,20318773-20318895,
           20319094-20319165,20321217-20321431,20321521-20321593,
           20322092-20322568,20322970-20323077,20323184-20323192,
           20323193-20323552
          Length = 765

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 363 GVQETEAVFGNQGTTVEAHTTDRFGCPDRVA 455
           G Q++EAV G QG+T+     D  G  D  A
Sbjct: 149 GAQDSEAVGGAQGSTIAGDQADARGAQDSTA 179


>01_02_0019 +
           10262685-10262909,10263014-10263076,10263155-10263316,
           10263407-10263589,10263676-10263806,10264251-10264419,
           10264524-10264653,10265702-10265898
          Length = 419

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +1

Query: 226 HQVIVLILQREVSMDTLAANFLKFSGSFSDHR-MVMFGSGDGPMVYRVFRKRKLFLVTRV 402
           H  + LIL  E     L  + L      S  R +V F SGD    YR  R+ KLF  +R 
Sbjct: 230 HNTLHLILTEEKLQQQL--DVLDRQWQISRRRALVSFKSGDKQSAYRYVRQSKLFSESRK 287

Query: 403 RPSRPIPPIDSVAQI 447
           R +  +  ++ V  +
Sbjct: 288 RFTPLLERVEEVISL 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,062,829
Number of Sequences: 37544
Number of extensions: 576671
Number of successful extensions: 1374
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)