Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0056.Seq
         (875 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)                    30   2.1  
SB_14370| Best HMM Match : MyTH4 (HMM E-Value=9.3e-25)                 29   6.5  
SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)                    29   6.5  
SB_41306| Best HMM Match : Ribosomal_L19e (HMM E-Value=8.5)            28   8.6  

>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
          Length = 610

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -3

Query: 447 DLGNRIYRWYGPRRSYPGYQKQLPFPEHPVHHGSVSGTEHDHSVV*KTA 301
           DL   I ++  PRR YP + +  P P  PV H    G  H +S   +TA
Sbjct: 150 DLIELILQYSQPRR-YPDFPRGTPHPPPPVTHDQRQGGTHPNSNSGQTA 197


>SB_14370| Best HMM Match : MyTH4 (HMM E-Value=9.3e-25)
          Length = 618

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 31  QDIAFDR-FRLRTNLHFQFFVNAAVDCVQHGFRQV 132
           +++AF R F +RT  +FQ F+  +V+C     R+V
Sbjct: 103 ENLAFHRIFLIRTTSYFQVFLRESVECALEEAREV 137


>SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2389

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 423 WYGPRRSYPGYQKQLP 376
           WYG    Y GY KQLP
Sbjct: 714 WYGTEAGYGGYNKQLP 729


>SB_41306| Best HMM Match : Ribosomal_L19e (HMM E-Value=8.5)
          Length = 220

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 142 CACKPGENHAVRNQR 98
           CAC+PG +HA+R+ R
Sbjct: 112 CACRPGGSHAMRSMR 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,104,718
Number of Sequences: 59808
Number of extensions: 640691
Number of successful extensions: 1601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)