Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0056.Seq
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    27   0.17 
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.8  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.9  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 71  CIFSFSSTPPLIAYSMVFARFARAPKNCICLPT-IIG 178
           C++ FS+T   I Y+++  ++  A K  IC  T IIG
Sbjct: 315 CLYYFSTTINPILYNLMSIKYRNAFKQTICCKTRIIG 351


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 333 RFRRRTHGVQGVQETEAVFGNQGTTV 410
           R R   HG++G ++   ++G+  +TV
Sbjct: 254 RARMGFHGMRGKRDAAGIYGSNSSTV 279


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 333 RFRRRTHGVQGVQETEAVFGNQGTTV 410
           R R   HG++G ++   ++G+  +TV
Sbjct: 254 RARMGFHGMRGKRDAAGIYGSNSSTV 279


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 354 GVQGVQETEAVFGNQG 401
           GVQGVQ  + V G QG
Sbjct: 843 GVQGVQTAQGVQGVQG 858



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 330 VRFRRRTHGVQGVQETEAVFGNQG 401
           V+  +   GVQGVQ  + V G QG
Sbjct: 847 VQTAQGVQGVQGVQGVQGVQGVQG 870



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 354 GVQGVQETEAVFGNQG 401
           GVQGVQ  + V G QG
Sbjct: 858 GVQGVQGVQGVQGVQG 873


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 577 RCTHPGRWKYXPKTLQXRSET*QQPGSR 660
           R   P  WK  P T++ R E  +Q   R
Sbjct: 578 RALWPTEWKVRPSTVEEREEFRRQERMR 605


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,172
Number of Sequences: 438
Number of extensions: 5559
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)