Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0056.Seq
(875 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 31 1.0
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r... 30 2.3
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r... 30 2.3
At5g63090.4 68418.m07921 LOB domain protein / lateral organ boun... 28 7.1
At5g63090.3 68418.m07920 LOB domain protein / lateral organ boun... 28 7.1
At5g63090.2 68418.m07919 LOB domain protein / lateral organ boun... 28 7.1
At5g63090.1 68418.m07918 LOB domain protein / lateral organ boun... 28 7.1
At5g03250.1 68418.m00274 phototropic-responsive NPH3 family prot... 28 7.1
At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2 (PL... 28 7.1
At5g11000.1 68418.m01281 expressed protein 28 9.4
At4g20010.1 68417.m02929 expressed protein contains Pfam PF05329... 28 9.4
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 28 9.4
At1g64570.1 68414.m07319 expressed protein 28 9.4
At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s... 28 9.4
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 31.1 bits (67), Expect = 1.0
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Frame = -2
Query: 466 NCSLATRSGQPNLSVVWASTVVPWLPKTASVS*TPCTPW-----VRLRNRT*P-FCGLKN 305
N LA RS QPNL V +P+ P + T C W V+L P G K
Sbjct: 1229 NVMLAGRSDQPNLQPVCWICKLPYNPGLTYIHCTSCDMWYHIEAVKLEESKIPEVVGFKC 1288
Query: 304 CR*TSRNSPLKCP 266
CR SP CP
Sbjct: 1289 CRCRRIRSP-DCP 1300
>At5g35210.2 68418.m04175 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1409
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Frame = -2
Query: 466 NCSLATRSGQPNLSVVWASTVVPWLPKTASVS*TPCTPW-----VRLRNRT*P-FCGLKN 305
N LA RS +P+L V ++P+ P + T C W V+L++ P G K
Sbjct: 1092 NILLAGRSDKPSLEPVCGICLLPYNPGLTYIHCTKCEKWFHTEAVKLKDSQIPEVVGFKC 1151
Query: 304 CR*TSRNSPLKCP 266
C+ SP CP
Sbjct: 1152 CKCRRIRSP-DCP 1163
>At5g35210.1 68418.m04174 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1576
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Frame = -2
Query: 466 NCSLATRSGQPNLSVVWASTVVPWLPKTASVS*TPCTPW-----VRLRNRT*P-FCGLKN 305
N LA RS +P+L V ++P+ P + T C W V+L++ P G K
Sbjct: 1092 NILLAGRSDKPSLEPVCGICLLPYNPGLTYIHCTKCEKWFHTEAVKLKDSQIPEVVGFKC 1151
Query: 304 CR*TSRNSPLKCP 266
C+ SP CP
Sbjct: 1152 CKCRRIRSP-DCP 1163
>At5g63090.4 68418.m07921 LOB domain protein / lateral organ
boundaries protein (LOB) identical to LOBa [Arabidopsis
thaliana] GI:17484100, SP|Q9FML4 LATERAL ORGAN
BOUNDARIES protein {Arabidopsis thaliana}
Length = 186
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 145 EELHLFTNDHRAYAASNSVVIVVEVRTHQ 231
EE H F N H+ + ASN ++ E+ HQ
Sbjct: 35 EEPHKFANVHKIFGASNVTKLLNELLPHQ 63
>At5g63090.3 68418.m07920 LOB domain protein / lateral organ
boundaries protein (LOB) identical to LOBa [Arabidopsis
thaliana] GI:17484100, SP|Q9FML4 LATERAL ORGAN
BOUNDARIES protein {Arabidopsis thaliana}
Length = 186
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 145 EELHLFTNDHRAYAASNSVVIVVEVRTHQ 231
EE H F N H+ + ASN ++ E+ HQ
Sbjct: 35 EEPHKFANVHKIFGASNVTKLLNELLPHQ 63
>At5g63090.2 68418.m07919 LOB domain protein / lateral organ
boundaries protein (LOB) identical to LOBa [Arabidopsis
thaliana] GI:17484100, SP|Q9FML4 LATERAL ORGAN
BOUNDARIES protein {Arabidopsis thaliana}
Length = 186
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 145 EELHLFTNDHRAYAASNSVVIVVEVRTHQ 231
EE H F N H+ + ASN ++ E+ HQ
Sbjct: 35 EEPHKFANVHKIFGASNVTKLLNELLPHQ 63
>At5g63090.1 68418.m07918 LOB domain protein / lateral organ
boundaries protein (LOB) identical to LOBa [Arabidopsis
thaliana] GI:17484100, SP|Q9FML4 LATERAL ORGAN
BOUNDARIES protein {Arabidopsis thaliana}
Length = 186
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 145 EELHLFTNDHRAYAASNSVVIVVEVRTHQ 231
EE H F N H+ + ASN ++ E+ HQ
Sbjct: 35 EEPHKFANVHKIFGASNVTKLLNELLPHQ 63
>At5g03250.1 68418.m00274 phototropic-responsive NPH3 family protein
contains some similarity to root phototropism RPT2
[Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
transducer of phototropic response PMID:10662859
Length = 592
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 1 NHALHHFIIVQDIAFDRFRLRTNLHFQFFVNAAVDCV--QHG 120
N L +IVQ + F++ RLRT++ FFV+ +D QHG
Sbjct: 484 NERLPLRVIVQVLFFEQLRLRTSVSGWFFVSENLDNPDNQHG 525
>At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2
(PLDBETA2) / PLDdelta1 identical to SP|O23078
Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD
beta 2) (PLDdelta1) [Arabidopsis thaliana]; contains
Pfam profiles: PF00614 phospholipase D.active site
motif, PF00168 C2 domain
Length = 927
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -3
Query: 429 YRWYGPRRSYPGYQKQLPFPEHPVHHGSVSGT---EHDH 322
Y W P Y + P+P P HHGS+S + +H H
Sbjct: 4 YGWNYPYYPYRPPRPNPPYPAPPHHHGSMSHSGPLDHHH 42
>At5g11000.1 68418.m01281 expressed protein
Length = 389
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 293 SSAAVFQTTEWSCSVPETDPWCTGCSGNGS 382
SSA EW+ S E + GCSG+GS
Sbjct: 345 SSACSSSVMEWASSADEAEYGGGGCSGSGS 374
>At4g20010.1 68417.m02929 expressed protein contains Pfam PF05329:
Protein of unknown function (DUF731)
Length = 371
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 371 LNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSID 261
LN + M PSP P M + SEK KK A+ D
Sbjct: 191 LNFIQPMSPSPSPFMVMSSSEKEESGIKKQPARAKQD 227
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 414 PRRSYPGYQKQLPFPEHP-VHHGSVSGTEHDH 322
P SY GY Q P+ ++P HHG +HD+
Sbjct: 405 PPPSYGGYM-QPPYQQYPPYHHGHSQQADHDY 435
>At1g64570.1 68414.m07319 expressed protein
Length = 1239
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 334 GSGDGPMVYRVFRKRKLFLVTRVRPSRPIPPID 432
G+ P++ R +R RK+F + VR + +PP++
Sbjct: 750 GASKAPIIARPYRSRKVFNRSVVRLAPDLPPVN 782
>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
similarity to SPL1-Related2 protein [Arabidopsis
thaliana] GI:6006427; contains Pfam profile PF03110: SBP
domain
Length = 1035
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +3
Query: 270 HFSGEFLEVQRQFFRPQNGHVRFRRRTHGVQGVQETEAVFGNQGTT 407
H EF E +R R GH R RR+T + V V GN TT
Sbjct: 168 HLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEVASGVVVPGNHDTT 213
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,535,486
Number of Sequences: 28952
Number of extensions: 432905
Number of successful extensions: 1169
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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