Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0055.Seq
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 119 2e-27
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 119 2e-27
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 113 1e-25
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 5e-07
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 30 1.5
11_04_0275 + 15685501-15685663,15685869-15685994,15687015-15687166 29 3.4
08_01_0401 - 3569545-3570003 28 4.4
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.4
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 7.7
01_01_0357 - 2816650-2817897 27 7.7
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 119 bits (286), Expect = 2e-27
Identities = 55/65 (84%), Positives = 60/65 (92%)
Frame = +1
Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 423
K+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 424 ERPRS 438
E+PRS
Sbjct: 138 EKPRS 142
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +2
Query: 56 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 235
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 236 KNGKK 250
KNGKK
Sbjct: 75 KNGKK 79
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 119 bits (286), Expect = 2e-27
Identities = 55/65 (84%), Positives = 60/65 (92%)
Frame = +1
Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 423
K+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 248 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 307
Query: 424 ERPRS 438
E+PRS
Sbjct: 308 EKPRS 312
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +2
Query: 56 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 235
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 236 KNGKK 250
KNGKK
Sbjct: 75 KNGKK 79
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +2
Query: 56 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 235
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 186 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 244
Query: 236 KNGKK 250
KNGKK
Sbjct: 245 KNGKK 249
Score = 115 bits (277), Expect = 2e-26
Identities = 53/63 (84%), Positives = 58/63 (92%)
Frame = +1
Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 423
K+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 424 ERP 432
E+P
Sbjct: 138 EKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 113 bits (271), Expect = 1e-25
Identities = 49/65 (75%), Positives = 56/65 (86%)
Frame = +2
Query: 56 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 235
HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
Query: 236 KNGKK 250
KNGKK
Sbjct: 146 KNGKK 150
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 244 KESDAFVPRDGCLNHIEENDEVLVAG 321
K+ AFVP DGCLN I+EN+ V G
Sbjct: 149 KKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 301 DEVLVAGFGRKGHAVGDIPGVRFKVVK 381
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 332 LRPNPATSTSSFSSMWFRQPSRGTNASLSFR 240
L P+ +T T +FS WFR PS+ T L R
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWTEEKLYAR 226
>11_04_0275 + 15685501-15685663,15685869-15685994,15687015-15687166
Length = 146
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 26 RNTNGA*DVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 190
RNT+ A D HRR Q K K+ G K K G++ A + ++VG+E K
Sbjct: 63 RNTDEAADAEHRRPQ--GQKAAKEQRKG-KGKGKLGKGSNAAARLDTDRVGLEGK 114
>08_01_0401 - 3569545-3570003
Length = 152
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/66 (25%), Positives = 24/66 (36%)
Frame = +2
Query: 20 TPRNTNGA*DVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 199
TP+ T G +H R + A E ++ W A P KGI + +
Sbjct: 78 TPKFTGGVLGASHMRVEAAAVAELREWEKTRSWIAGPAEDRRRRKGIAMVATTAREDEGV 137
Query: 200 SAIRKC 217
S R C
Sbjct: 138 SGRRNC 143
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 70 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 168
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -2
Query: 469 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 320
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
>01_01_0357 - 2816650-2817897
Length = 415
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 349 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 263
H+ ++ DR+PPLVLR + G R G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,670,076
Number of Sequences: 37544
Number of extensions: 349107
Number of successful extensions: 963
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -