Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0055.Seq
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical pr... 132 2e-31
Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical pr... 36 0.026
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 28 5.3
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 28 5.3
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 27 7.0
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 27 9.2
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 9.2
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 9.2
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 9.2
>Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical
protein F28D1.7 protein.
Length = 143
Score = 132 bits (318), Expect = 2e-31
Identities = 57/65 (87%), Positives = 63/65 (96%)
Frame = +2
Query: 56 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 235
HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLI
Sbjct: 16 HRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLI 75
Query: 236 KNGKK 250
KNGKK
Sbjct: 76 KNGKK 80
Score = 115 bits (277), Expect = 2e-26
Identities = 52/65 (80%), Positives = 58/65 (89%)
Frame = +1
Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 423
K+ AFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KK
Sbjct: 79 KKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKK 138
Query: 424 ERPRS 438
ERPRS
Sbjct: 139 ERPRS 143
>Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical
protein T03D8.2 protein.
Length = 157
Score = 35.5 bits (78), Expect = 0.026
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2
Query: 137 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
G SH KGIVL+ V K+PNS RKC V+L
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 374 TLKRTPGMSPTA*PLRPNPATSTSS 300
T RTP +P A P RP P+ S+++
Sbjct: 38 TTMRTPAATPAAPPTRPTPSRSSAA 62
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 374 TLKRTPGMSPTA*PLRPNPATSTSS 300
T RTP +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 238 ERKESDAFVPRDGCLNHIEENDEVLVAG 321
E K S+ + RDGC I+++ V VAG
Sbjct: 435 ETKSSEMIIKRDGCFEVIDDHLMVSVAG 462
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -3
Query: 195 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 37
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 366 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 425
Query: 36 FVFLGVY 16
FVFLG++
Sbjct: 426 FVFLGIF 432
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -3
Query: 195 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 37
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 366 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 425
Query: 36 FVFLGVY 16
FVFLG++
Sbjct: 426 FVFLGIF 432
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -3
Query: 195 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 37
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 500 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 559
Query: 36 FVFLGVY 16
FVFLG++
Sbjct: 560 FVFLGIF 566
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -3
Query: 195 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 37
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 500 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 559
Query: 36 FVFLGVY 16
FVFLG++
Sbjct: 560 FVFLGIF 566
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,944,713
Number of Sequences: 27780
Number of extensions: 279982
Number of successful extensions: 758
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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