Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0055.Seq
(560 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 120 7e-28
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 120 7e-28
At3g63320.1 68416.m07123 protein phosphatase 2C-related / PP2C-r... 30 1.2
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ... 29 2.8
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 28 3.7
At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 4.9
At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 4.9
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to... 27 6.5
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to... 27 6.5
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P... 27 6.5
At4g29100.1 68417.m04165 ethylene-responsive family protein cont... 27 8.6
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 120 bits (289), Expect = 7e-28
Identities = 55/65 (84%), Positives = 61/65 (93%)
Frame = +1
Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 423
K+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 424 ERPRS 438
E+PRS
Sbjct: 138 EKPRS 142
Score = 112 bits (269), Expect = 2e-25
Identities = 49/64 (76%), Positives = 57/64 (89%)
Frame = +2
Query: 59 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 238
R QRWADK++KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 239 NGKK 250
NGKK
Sbjct: 76 NGKK 79
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 120 bits (289), Expect = 7e-28
Identities = 55/65 (84%), Positives = 61/65 (93%)
Frame = +1
Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 423
K+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 424 ERPRS 438
E+PRS
Sbjct: 138 EKPRS 142
Score = 103 bits (247), Expect = 8e-23
Identities = 47/64 (73%), Positives = 54/64 (84%)
Frame = +2
Query: 59 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 238
R QRWADK +KK++ G +WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 239 NGKK 250
NGKK
Sbjct: 76 NGKK 79
>At3g63320.1 68416.m07123 protein phosphatase 2C-related /
PP2C-related protein phosphatase 2C - Rattus norvegicus,
EMBL:AF095927
Length = 423
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 542 FFAVHNIYYVLDFTFYELINNALPDSRSLITMYTYDLGRSFF 417
+FA+H IY++LD TF + + LP+S M+ YDL F
Sbjct: 92 YFALH-IYFLLDATFSKELTGKLPNS----LMHLYDLDSQRF 128
>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 289
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 373 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALFI 489
VV++ +SL Y KKE+ + +++ D+L A+F+
Sbjct: 80 VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 238 ERKESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 396
E K+S VP+ + E D+V GF K V D+P + +VV + NVS
Sbjct: 820 EEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 74 WADKEFKKAHMGTKWKANPFGGASHAKG 157
W+ F+ A + T W+ +PFG A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602
>At1g32940.1 68414.m04057 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 774
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 74 WADKEFKKAHMGTKWKANPFGGASHAKG 157
W+ F+ A + T W+ +PFG A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599
>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1158
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 238 ERKESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 396
E K+S VP+ + E D+ GF K V D+P + +VV + NVS
Sbjct: 868 EEKKSSPKVPKKVKKQLVYEQDDAHPHGFKAKTVLVPDVPAQQIEVVIRAGNVS 921
>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1139
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 238 ERKESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 396
E K+S VP+ + E D+ GF K V D+P + +VV + NVS
Sbjct: 849 EEKKSSPKVPKKVKKQLVYEQDDAHPHGFKAKTVLVPDVPAQQIEVVIRAGNVS 902
>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1383
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 238 ERKESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 396
E K+S VP+ + E D+ GF K V D+P + +VV + NVS
Sbjct: 820 EEKKSSPKVPKKVKKQLVYEQDDAHPHGFKAKTVLVPDVPAQQIEVVIRAGNVS 873
>At4g29100.1 68417.m04165 ethylene-responsive family protein
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 407
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 359 PGMSPTA*P-LRPNPATSTSSFSSMWFRQPSRGTNASLS 246
P M PT P P+PATS+SS SS PS N +LS
Sbjct: 56 PRMMPTPFPHFLPSPATSSSSSSS----SPSLPNNPNLS 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,242,870
Number of Sequences: 28952
Number of extensions: 262635
Number of successful extensions: 672
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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