Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0051.Seq
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    32   0.061
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    28   1.00 
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   9.3  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   9.3  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 32.3 bits (70), Expect = 0.061
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 430 DTMVVSNYTNILLDENYFPEPYSFKPERFLVNG 332
           D MV+      L D   +PEP +F P+R+  NG
Sbjct: 408 DAMVIPTLYGALHDSKVYPEPETFNPDRWAPNG 440


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 323 SA*PLLSFGLAKHRCMGDALAKCISSFSLLQCCRGSRWCLYRGKV 189
           +A P L FG  +HRC+G+  A    S  + +      W L  GKV
Sbjct: 428 AASPYLPFGAGRHRCIGEQFAYMHLSTIISKFVHDYTWTLI-GKV 471


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 218 NLCSIVVVKTKICTWLMHRPCSD 286
           ++CSI+V  T +  WL+ R   D
Sbjct: 232 SICSIIVENTTLVEWLLSRSSVD 254


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 456  PDLFLQPCQFPPELSFGLLLSNEIAEAEA-HTLA 554
            PD+ + P  FP  ++ G+ + +   +A A H LA
Sbjct: 983  PDIIINPHAFPSRMTIGMFIESLAGKAGACHGLA 1016


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,096
Number of Sequences: 5004
Number of extensions: 46565
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)