Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0051.Seq
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    28   0.067
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   7.7  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   7.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.7  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   7.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.7  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   7.7  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 614 SEGQLVAMCMDMFMAGTETTSKSMSFCFSYLVREQESKGKLRRKL 480
           ++  + A     F+AG ET+S +MS     L   Q+ + KLR ++
Sbjct: 290 TDSLIAAQAFVFFLAGFETSSTTMSNALYELALNQDVQKKLREEI 334



 Score = 28.3 bits (60), Expect = 0.067
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 391 DENYFPEPYSFKPERFLVNGRVSL-PDHYFP 302
           D   +P P SF PERF  +   S  P HY P
Sbjct: 406 DSAIYPNPDSFDPERFDQDAMASRHPMHYLP 436


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 154  RSGSVHMIQGRQTFPRYRHQREPLQHCS 237
            R   +  I+   T+   RH  E L HC+
Sbjct: 1669 RGTVIRSIRSHSTWDPRRHMYEELNHCA 1696


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 179 KDGRPSPGTGTSENL 223
           KDGR  PGTG    L
Sbjct: 369 KDGRQLPGTGRQSEL 383


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 179 KDGRPSPGTGTSENL 223
           KDGR  PGTG    L
Sbjct: 369 KDGRQLPGTGRQSEL 383


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 638 EHGEVNTYSEGQLVAMCMDMFMAGTETTSKSMSFCF 531
           +HG  NT S  +L   C D F    + ++ ++S  F
Sbjct: 75  KHGLTNTASHTRLSCDCDDKFYDCLKNSADTISSYF 110


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 638 EHGEVNTYSEGQLVAMCMDMFMAGTETTSKSMSFCF 531
           +HG  NT S  +L   C D F    + ++ ++S  F
Sbjct: 80  KHGLTNTASHTRLSCDCDDKFYDCLKNSADTISSYF 115


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 469 RKRSGTERER*A*DTMVVSNYTNILLDENYFPEPYS 362
           R R  TERER + +  ++S+ +N  +  N +   Y+
Sbjct: 65  RSRDRTERER-SREPKIISSLSNNTIHNNNYKYNYN 99


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 469 RKRSGTERER*A*DTMVVSNYTNILLDENYFPEPYS 362
           R R  TERER + +  ++S+ +N  +  N +   Y+
Sbjct: 66  RSRDRTERER-SREPKIISSLSNNTIHNNNYKYNYN 100


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 469 RKRSGTERER*A*DTMVVSNYTNILLDENYFPEPYS 362
           R R  TERER + +  ++S+ +N  +  N +   Y+
Sbjct: 66  RSRDRTERER-SREPKIISSLSNNTIHNNNYKYNYN 100


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 469 RKRSGTERER*A*DTMVVSNYTNILLDENYFPEPYS 362
           R R  TERER + +  ++S+ +N  +  N +   Y+
Sbjct: 66  RSRDRTERER-SREPKIISSLSNNTIHNNNYKYNYN 100


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 469 RKRSGTERER*A*DTMVVSNYTNILLDENYFPEPYS 362
           R R  TERER + +  ++S+ +N  +  N +   Y+
Sbjct: 66  RSRDRTERER-SREPKIISSLSNNTIHNNNYKYNYN 100


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 560 TTSKSMSFCFSYLVREQESKGKLRRKL 480
           TTS ++S  F  L+R +++   LR KL
Sbjct: 606 TTSGTISEKFRKLIRIEDNVATLRMKL 632


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 15  NLRNTFQSYHNQNTTPNGYGVNEN*N*K 98
           N  N   +Y+N N   N Y  N N N K
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCK 352


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 638 EHGEVNTYSEGQLVAMCMDMFMAGTETTSKSMSFCF 531
           +HG  NT S  +L   C D F    + ++ ++S  F
Sbjct: 80  KHGLTNTASHTRLSCDCDDKFYDCLKNSADTISSYF 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,342
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)