Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0050.Seq
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405...    33   0.37 
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987...    31   1.1  
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084...    30   2.0  
08_01_0510 + 4455805-4456637,4457837-4457912                           29   4.6  
07_01_0310 + 2209084-2209554                                           29   6.1  
05_04_0062 + 17607290-17608852                                         28   8.0  
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172...    28   8.0  

>06_03_0649 +
           23138442-23138842,23139576-23139849,23139929-23140562,
           23140771-23140826,23141178-23141282,23141295-23141535,
           23142686-23142690
          Length = 571

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 275 PKPPELSPIYLPVSP-VMPVQPLTSLTL-TQTASGPE 379
           P+PP+ SPI++P SP   P  P +SL   T TA  P+
Sbjct: 69  PRPPQSSPIFVPDSPNPSPAAPTSSLASGTSTARPPQ 105


>09_04_0260 -
           16197522-16197669,16198027-16198130,16198508-16198719,
           16198795-16198900,16199006-16199119,16199200-16199417,
           16199837-16199900,16199982-16200335,16200609-16200767,
           16201486-16202907
          Length = 966

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 229 GHGQPGRL*SQASAVAQTAGIIAHLSAGIPG 321
           G    GR  S+ + V +T G+++ +S+G+PG
Sbjct: 97  GRAPAGRAASKGAGVGETLGVVSRVSSGVPG 127


>04_04_1536 -
           34207425-34207490,34207801-34208268,34208345-34208485,
           34208582-34208820,34209950-34210436
          Length = 466

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 41  FLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWD 172
           FL+LL+  +A AAP ++I  Y+     R +++G   +    A+D
Sbjct: 10  FLLLLIVGAATAAPDMSIISYNAEHGARGLEEGPTEAEARAAYD 53


>08_01_0510 + 4455805-4456637,4457837-4457912
          Length = 302

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -3

Query: 495 WSDRVSELTRVDDELID--KIQVLSHVSEEG 409
           W D+V ELT   D+ ID  +++V+SH  E G
Sbjct: 69  WRDKVRELTFDIDDCIDSFEVRVISHQQERG 99


>07_01_0310 + 2209084-2209554
          Length = 156

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/59 (33%), Positives = 22/59 (37%)
 Frame = -1

Query: 410 GPRDCLKPAKFPDLTPSV*ELMTLAAAQASPGIPADRWAIIPAVWATADA*LHNRPGWP 234
           G   C       D TP     +TL    A P IPA     IPAV    +A L   P  P
Sbjct: 7   GSSSCQAARLLADATPPAVPAVTLPPMPAIPAIPAATLPPIPAVPTVPNAALPPMPAVP 65


>05_04_0062 + 17607290-17608852
          Length = 520

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +3

Query: 135 MEKLVP*SHVHGTTSMTLTKASPSSTFKRS*RTWPARAIMKSSISGGPNRRNYRP 299
           +EK+   S V G  +   + AS SS+  RS R+    + M S+ SGGP+   Y P
Sbjct: 29  LEKIRSLSVVSGEVAGWSSSASASSS--RSARSSYYSSSMSSNASGGPHNHRYAP 81


>03_01_0218 -
           1717246-1717892,1717995-1718163,1718262-1720022,
           1720531-1720610,1720854-1720981,1721004-1721012,
           1723701-1723742,1725891-1726002,1726358-1726514,
           1726678-1726762,1727628-1727713,1727998-1728042
          Length = 1106

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -1

Query: 380 FPDLTPSV*ELMTLAAAQASPGIPADRWAII---PAVWATADA*LHNRPGWPCPSRSLE 213
           FPD  P +  L+T  +    PG+  +    +   PA W ++     +R G+P P   LE
Sbjct: 811 FPDDLPPIGTLVTAPSVLIHPGVLQENSTEVPPSPASWCSSPPDEMSRGGYPSPVSPLE 869


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,317,494
Number of Sequences: 37544
Number of extensions: 470085
Number of successful extensions: 1645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)