Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0050.Seq
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54110| Best HMM Match : Hexapep (HMM E-Value=9.8e-14)               30   2.7  
SB_47241| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_37123| Best HMM Match : Extensin_2 (HMM E-Value=1.5)                29   3.5  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               29   4.7  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          29   4.7  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_7458| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_4602| Best HMM Match : dsrm (HMM E-Value=5.9e-14)                   29   4.7  
SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)                   29   6.2  
SB_56403| Best HMM Match : fn3 (HMM E-Value=1.5e-29)                   29   6.2  

>SB_54110| Best HMM Match : Hexapep (HMM E-Value=9.8e-14)
          Length = 729

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 265 MLDFIIALAGHVLQDLLNVEDGDAFVSVIDVV 170
           +LD +  + G  L D ++VEDGDA +  +DVV
Sbjct: 125 LLDDVDVVDGATLLDDVDVEDGDAMLDDVDVV 156


>SB_47241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +2

Query: 107 DNEIPRDIDDGK----ASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYEVKHQRW 274
           D +  +D DD      A+ V++   DY DD D    ++NV+ +L   AS   Y  KH   
Sbjct: 49  DYDEVKDNDDNNVGDLANGVVADENDYDDDCDNYDYLINVEGLLYMNASLWKYMEKH--- 105

Query: 275 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGP 376
            K  + S  +  +S ++ + P   +T  Q    P
Sbjct: 106 -KVKQDSKAFQLLSKLLVMDPNKRITSEQALQDP 138


>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 667 VNRDVGQRCCCFGCCEELYNLLTMQYSSFK 578
           ++ D G  CCC+ C + L+    +    FK
Sbjct: 320 IHGDTGHLCCCWSCAQRLFRFQVLFNQCFK 349


>SB_37123| Best HMM Match : Extensin_2 (HMM E-Value=1.5)
          Length = 318

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 314 SPVMPVQPLTSLTLTQTA--SGPETSPASDNLSVPSSDTWD 430
           SP+   Q  +S  LTQT   S    +   DNLS P + TWD
Sbjct: 178 SPLTQTQDNSSSPLTQTQDISSSPLNQTWDNLSCPLTQTWD 218


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +1

Query: 271 VAQTAGIIAHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPF 414
           VAQ AG IA LSA   G+A     +IN   + V S N     Q +G F
Sbjct: 364 VAQLAGSIAELSAYHHGEASLMGTIINLAENFVGSNNI-NLLQPVGQF 410


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 56   VATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI 223
            V++ AY A  VTI +YSD      I++ + S      W+  DD   ++  LN+ ++
Sbjct: 2786 VSSKAYGA-RVTIGKYSDRAGKAAIENVEFSLCGQEGWNDWDDPRYALTYLNLDDV 2840


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 311  VSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 418
            V+P       T + +T+TA+GPET+ AS+    P +
Sbjct: 1370 VAPKSTTLASTVVPITETAAGPETTLASETTMAPKT 1405


>SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 522 IYDFEAAWDAILASSDSSFLNEEYCIVKRLYNSSQQPKQQHR------WPTSR 662
           +YD +A    ++   D  F+N+ + +V  + +   +  QQHR      WPT+R
Sbjct: 60  LYDRDAFGKVMILGEDLRFINKLHRLVNNINSLRSRNDQQHRDGYVVVWPTNR 112


>SB_7458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 522 IYDFEAAWDAILASSDSSFLNEEYCIVKRLYNSSQQPKQQHR------WPTSR 662
           +YD +A    ++   D  F+N+ + +V  + +   +  QQHR      WPT+R
Sbjct: 89  LYDRDAFGKVMILGEDLRFINKLHRLVNNINSLRSRNDQQHRDGYVVVWPTNR 141


>SB_4602| Best HMM Match : dsrm (HMM E-Value=5.9e-14)
          Length = 579

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +3

Query: 531 FEAAWDAILASSDSSFLNEEYCIVKRLYNSSQQPKQQHRWPTS 659
           FE+  D I +SSD+SF NEE  + + +Y   ++P+   ++ +S
Sbjct: 273 FESEEDDI-SSSDNSFQNEEPALPRHIYIQRKKPQPVSQYSSS 314


>SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1492

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 450 STRHQPWSTPILCRTSP 500
           + +H PW+TP++ RT P
Sbjct: 536 TVKHGPWNTPVVARTKP 552


>SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)
          Length = 678

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 212 VQEILKDMASQGDY-EVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTAS 370
           +++ LKD   QGD+ E+   ++  PP + P +L     + + PLTS TL   AS
Sbjct: 278 MEQQLKDF--QGDWVEIAFTQYA-PPSVIPAFLAPDSALEMIPLTSPTLRSLAS 328


>SB_56403| Best HMM Match : fn3 (HMM E-Value=1.5e-29)
          Length = 236

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 450 STRHQPWSTPILCRTSP 500
           + +H PW+TP++ RT P
Sbjct: 218 TVKHGPWNTPVVARTKP 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,010,696
Number of Sequences: 59808
Number of extensions: 506274
Number of successful extensions: 2060
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2048
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)