Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0050.Seq
(836 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68004-8|CAA91989.1| 218|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 30 2.3
DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin p... 30 2.3
AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin p... 30 2.3
Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z75710-8|CAO82023.1| 394|Caenorhabditis elegans Hypothetical pr... 29 5.4
AC006733-6|AAF60489.2| 581|Caenorhabditis elegans Hypothetical ... 29 5.4
U61953-1|AAC48075.2| 569|Caenorhabditis elegans Hypothetical pr... 28 7.2
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 28 7.2
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 7.2
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL117204-42|CAB55146.2| 714|Caenorhabditis elegans Hypothetical... 28 7.2
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 28 9.5
U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical pr... 28 9.5
>Z68004-8|CAA91989.1| 218|Caenorhabditis elegans Hypothetical
protein F47B10.9 protein.
Length = 218
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 522 FFHLRTTQGWSDRVSELTRVDDELIDKIQV-LSHVSEEGTE 403
+FH+ T ++++ SE +DD D++ V LS+V EG E
Sbjct: 50 YFHILRTGSYTEKTSEKVTLDDVYTDELVVFLSYVCPEGFE 90
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 468 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 334
++ D L+D+++ + HV+ E E A + S +AV NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 468 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 334
++ D L+D+++ + HV+ E E A + S +AV NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 468 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 334
++ D L+D+++ + HV+ E E A + S +AV NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 468 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 334
++ D L+D+++ + HV+ E E A + S +AV NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764
>DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin
proteoglycan-4 protein.
Length = 782
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 438 QVLSHVSEEGTERLS-EAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSG 283
++L H+SE+ TE S +GE+SG + N+ SG D GDNSG
Sbjct: 508 EILEHISEKSTEESSGSSGEMSGDGS----DNEASGEGSGEYDASGSSGDNSG 556
>AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin
proteoglycan protein 4 protein.
Length = 782
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 438 QVLSHVSEEGTERLS-EAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSG 283
++L H+SE+ TE S +GE+SG + N+ SG D GDNSG
Sbjct: 508 EILEHISEKSTEESSGSSGEMSGDGS----DNEASGEGSGEYDASGSSGDNSG 556
>Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical
protein F36H1.3 protein.
Length = 597
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 275 PKPPEL-SPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDT 424
P PP + SP LP +P +P+T P +SPA + P++ T
Sbjct: 503 PAPPAIPSPAKLPTAPPPVEKPVTPSPSASPLPSPVSSPAPQLVQKPTTPT 553
>Z75710-8|CAO82023.1| 394|Caenorhabditis elegans Hypothetical
protein D1081.10 protein.
Length = 394
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 224 LKDMASQGDYEVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTA--SGPETSPASD 397
L + + YE K KPP+ + + + PLT+ T TQ + + ++S SD
Sbjct: 45 LASLYTHDTYETKLSEMKKPPKSRYSQVHTTTPIDKSPLTTQTSTQVSVNTSSDSSKTSD 104
Query: 398 NLSV 409
N +V
Sbjct: 105 NSTV 108
>AC006733-6|AAF60489.2| 581|Caenorhabditis elegans Hypothetical
protein Y32H12A.5 protein.
Length = 581
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/68 (35%), Positives = 32/68 (47%)
Frame = -3
Query: 555 RLHPKRLRSHRFFHLRTTQGWSDRVSELTRVDDELIDKIQVLSHVSEEGTERLSEAGEVS 376
+LHP+R HLR D L DD+ D+++V ++EE SE GE
Sbjct: 201 KLHPQRRGHEDGKHLRFVTAGHDAEIHLDHSDDD--DELEV--EINEEEVIIPSETGE-- 254
Query: 375 GPDAVCVR 352
GP AV R
Sbjct: 255 GPRAVIKR 262
>U61953-1|AAC48075.2| 569|Caenorhabditis elegans Hypothetical
protein R08C7.6 protein.
Length = 569
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 284 PELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 412
P++ P LPV + + S+ + + E P SD+ SVP
Sbjct: 344 PKMPPFVLPVETSVGCDNMNSVAIVHSEIDTEFRPMSDSQSVP 386
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 275 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 424
P P +P PV+ P T+ T T T + +T+P + ++ PS+ T
Sbjct: 669 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 719
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 275 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 424
P P +P PV+ P T+ T T T + +T+P + ++ PS+ T
Sbjct: 725 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 775
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 275 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 424
P P +P PV+ P T+ T T T + +T+P + ++ PS+ T
Sbjct: 548 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 598
>AL117204-42|CAB55146.2| 714|Caenorhabditis elegans Hypothetical
protein Y116A8C.4 protein.
Length = 714
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -1
Query: 401 DCLKPAKFPDLTPSV*ELMTLAAAQASPG 315
D +KPA DL PSV + M L A SPG
Sbjct: 286 DKMKPAVLDDLVPSV-DFMGLVKAMISPG 313
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +2
Query: 251 YEVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTAS----GPETSPASDNLSVPSS 418
Y+ P S IYLP V+P +S+ L+ T S P+T PAS +++ ++
Sbjct: 488 YQTTDYMLPPGYPSSSIYLPQPAYPEVKPNSSVILSSTQSQNNTSPQTIPASASVTNSAT 547
Query: 419 DT 424
T
Sbjct: 548 ST 549
>U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical
protein C54D2.1 protein.
Length = 373
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 453 TRHQPWSTPILCRTSPGLCGGGRIYDFEAAWDAILASSDSSFLNEEYC 596
+R +P TP C +P CG G+I +S++ L YC
Sbjct: 303 SREEPGCTPYNCACNPMGCGQGQIVRINFVIPGQQCNSNNQCLAGSYC 350
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,107,966
Number of Sequences: 27780
Number of extensions: 371912
Number of successful extensions: 1329
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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