Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0050.Seq
         (836 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45330.1 68416.m04894 lectin protein kinase family protein co...    36   0.025
At2g16890.2 68415.m01944 UDP-glucoronosyl/UDP-glucosyl transfera...    33   0.18 
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    31   0.72 
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    29   2.9  
At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family pr...    29   3.8  
At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain...    29   3.8  
At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain...    29   3.8  
At2g17550.1 68415.m02031 expressed protein                             29   3.8  
At3g51290.1 68416.m05614 proline-rich family protein                   29   5.1  
At5g66640.1 68418.m08399 LIM domain-containing protein-related c...    28   6.7  
At2g39220.1 68415.m04817 patatin family protein similar to patat...    28   6.7  
At3g12200.1 68416.m01521 protein kinase family protein contains ...    28   8.8  

>At3g45330.1 68416.m04894 lectin protein kinase family protein
           contains Serine/Threonine protein kinases active-site
           signature, Prosite:PS00108; contains Pfam profiles
           PF00069: Protein kinase domain, PF00139: Legume lectins
           beta domain, PF00138: Legume lectins alpha domain
          Length = 682

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +2

Query: 212 VQEILKDMASQGDYEVKHQRWPKPPELSP---IYLPVSPVMPVQPLTSLTLTQTASGPET 382
           + E   +M     Y  +HQR P+    +P   +  PV   +P   +TS ++T + SGP  
Sbjct: 602 IPEARPNMEQVVQYINRHQRLPEFSPNTPGIGVSTPVLMGLPSLAITSSSVTSSVSGPSA 661

Query: 383 SPASDNLSVPSSDT 424
           SP+S N S+  S T
Sbjct: 662 SPSSANNSMFISHT 675


>At2g16890.2 68415.m01944 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 478

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -3

Query: 501 QGWSDRVSELTRVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRV 349
           +G++DR+ E   +  + +D+ ++LSH S +G   LS  G  S  +++CV V
Sbjct: 326 EGFNDRIRESGMIVRDWVDQWEILSHESVKGF--LSHCGWNSAQESICVGV 374


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 275 PKPPELSPIYLPVSPVMPVQPLTS-LTLTQTASGPETSPASDNLSVPSSDTWD 430
           P PP  SP   P  PV P+ P TS +    T S  E+   S  +  P+ D+ D
Sbjct: 811 PPPPVFSP---PPKPVTPLPPATSPMANAPTPSSSESGEISTPVQAPTPDSED 860



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
 Frame = +2

Query: 281 PPELSPIYLPVSPVM-----PVQPLTSLTLTQTASGPETSPASDNLSVP 412
           PP  SPIY P  PV      PV PL   T     +   +S  S  +S P
Sbjct: 802 PPPPSPIYSPPPPVFSPPPKPVTPLPPATSPMANAPTPSSSESGEISTP 850


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 278 KPPELSPIYLPVSPVM---PVQPLTSLTLTQTASGPETSP 388
           KPP  SP+  P +P +   PVQP T    T     P T+P
Sbjct: 132 KPPTTSPVKPPTTPPVQSPPVQPPTYKPPTSPVKPPTTTP 171



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +2

Query: 281 PPELSPIYLPVSP-VMP--VQPLTSLTLTQTASGPETSPASDNLSVP 412
           PP   P Y P +P V P  VQP T    T T   P TSP     + P
Sbjct: 100 PPVQPPTYKPPTPTVKPPSVQPPTYKPPTPTVKPPTTSPVKPPTTPP 146


>At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family
           protein contains similarity to helix-loop-helix
           DNA-binding protein
          Length = 294

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 137 GKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYEVKHQRWPKPPELSPIYLPVS 316
           G  +S+I    +Y+ +  + +  L  ++  K  A      V     P PP LSP   P+S
Sbjct: 134 GDQASIIGGVVEYISELQQVLQSLEAKKQRKTYAEVLSPRVVPSPRPSPPVLSPRKPPLS 193

Query: 317 PV 322
           P+
Sbjct: 194 PL 195


>At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 275 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPS 415
           P PP   P+  P+ P     P+ S   T TAS   +  ++  L  P+
Sbjct: 759 PAPPMSRPLSAPIIPPTQAAPVISAVQTSTASLARSMSSTGRLGSPT 805


>At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 275 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPS 415
           P PP   P+  P+ P     P+ S   T TAS   +  ++  L  P+
Sbjct: 759 PAPPMSRPLSAPIIPPTQAAPVISAVQTSTASLARSMSSTGRLGSPT 805


>At2g17550.1 68415.m02031 expressed protein
          Length = 765

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 480 SELTRVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVR 352
           +EL R  +EL  ++QV + V EE  + +    ++  PD V VR
Sbjct: 546 NELRRQINELESEVQVRTPVEEEPIQEIETIVDLGNPDKVFVR 588


>At3g51290.1 68416.m05614 proline-rich family protein 
          Length = 602

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +2

Query: 275 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWD 430
           P PP   P   P  P+ P    T+ T T T+S     P       P S TWD
Sbjct: 74  PPPPPPRP---PPPPLSPGSETTTWTTTTTSSVLPPPPPPPPPPPPPSSTWD 122


>At5g66640.1 68418.m08399 LIM domain-containing protein-related
           contains low similarity to Pfam profile PF00412: LIM
           domain
          Length = 450

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -1

Query: 200 RCFC--QCHRRSPMHVRLRN*LFHHQCRVEFH 111
           RC C   CHR   MH  L+   FH  C  E++
Sbjct: 95  RCLCCFHCHRPFVMHEILKKGKFHIDCYKEYY 126


>At2g39220.1 68415.m04817 patatin family protein similar to
           patatin-like latex allergen [Hevea
           brasiliensis][PMID:10589016]; contains patatin domain
           PF01734
          Length = 499

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 404 RDCLKPAKFP--DLTPSV*ELMTLAAAQASPGIPADRWAIIPAVWA 273
           +D LKP   P  DLT S   L + A A  + G     W +  A WA
Sbjct: 233 KDTLKPVLIPCYDLTSSAPFLFSRADALETDGYDFKLWEVCRATWA 278


>At3g12200.1 68416.m01521 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 571

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 290 LSPIYLPVSPVMPV 331
           LSPIYLPV P+ PV
Sbjct: 283 LSPIYLPVFPIKPV 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,234,566
Number of Sequences: 28952
Number of extensions: 348537
Number of successful extensions: 1282
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)