Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0049.Seq
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.1  
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    30   2.1  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    30   2.7  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    30   2.7  
02_05_1321 - 35695474-35696161,35696315-35696547                       29   6.3  
10_04_0014 + 7578921-7579649                                           28   8.3  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 302 ITIHWPSFYNVV-TGKTLALPNLIALQH 382
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 702 TVSGPIAPDRRFFALWTLESTFL**WTLVPKLE 604
           T++G    D  FF  WT  STF   W++VP L+
Sbjct: 57  TITGSQEGDVGFFWSWTYWSTFFLSWSIVPTLQ 89


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 364 LNRLAAHPPFASWRNSEEARTDRPSQQLRXLNGEWQIVSVNILLKFAL 507
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 364 LNRLAAHPPFASWRNSEEARTDRPSQQLRXLNGEWQIVSVNILLKFAL 507
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451


>02_05_1321 - 35695474-35696161,35696315-35696547
          Length = 306

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 84 ADMF*IFMLLSGIIFKFVNKC 22
          A +F IF+LLS  +FK VN C
Sbjct: 36 AQIFLIFLLLSSFVFKAVNDC 56


>10_04_0014 + 7578921-7579649
          Length = 242

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
 Frame = -2

Query: 386 GCAARR--LSWVTPGFSQSRRC-KTTASEL*YDSL*GELGTGPPLEFFFFLMVKNHMHIS 216
           GC  +R  L+W+T  FSQ + C ++TA+     SL    G G   +F   + V   +HI+
Sbjct: 2   GCQKKRHLLTWLTRRFSQRKPCRRSTATHGCCHSL---SGVGNRQQFARSVEVIQKIHIN 58

Query: 215 LYLI--------FRFLQDLIKNRK 168
           + L+         R+L+D++ N++
Sbjct: 59  VPLLDAMQVPTYARYLKDILNNKR 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,922,713
Number of Sequences: 37544
Number of extensions: 455150
Number of successful extensions: 998
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)