Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0049.Seq
         (861 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   2.2  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   5.2  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   9.0  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 750 RP*IRTLKGAPGFRAXPGEPGEPWARKE-GXKTE 848
           RP    L G  G +  PG PG P A+ E G K E
Sbjct: 542 RPGAPGLPGRDGEKGEPGRPGLPGAKGERGLKGE 575



 Score = 25.0 bits (52), Expect = 3.0
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 744 P*RP*IRTLKGAPGFRAXPGEPGEPWARKE-GXKTE 848
           P RP    + G  G+   PGE G P  R E G K E
Sbjct: 600 PGRPGASGVPGERGYPGMPGEDGTPGLRGEPGPKGE 635



 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 774 GAPGFRAXPGEPGEP 818
           G PG R  PG  GEP
Sbjct: 622 GTPGLRGEPGPKGEP 636



 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 768 LKGAPGFRAXPGEPGEP 818
           LKGA G R  PG  G P
Sbjct: 113 LKGAKGVRGFPGSEGLP 129



 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 768 LKGAPGFRAXPGEPGEPWA 824
           +KG  G R   GEPG P A
Sbjct: 587 MKGDKGERGYAGEPGRPGA 605



 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 771 KGAPGFRAXPGEPGEP 818
           KG PG    PG  GEP
Sbjct: 633 KGEPGLLGPPGPSGEP 648


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 744 P*RP*IRTLKGAPGFRAXPGEPG 812
           P RP +  +KG PG +   G PG
Sbjct: 175 PGRPGVDGVKGLPGLKGDIGAPG 197



 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 771 KGAPGFRAXPGEPGEPWARKE 833
           KG  G+    G PGEP A  E
Sbjct: 292 KGDKGYTGPEGPPGEPGAASE 312


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 346 NPGVTQLNRLAAHPPFASWRNS 411
           +PG     +L+ HPP AS R+S
Sbjct: 835 HPGAQTQPQLSQHPPGASGRSS 856


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 847,149
Number of Sequences: 2352
Number of extensions: 17871
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 91786122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)