Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0049.Seq
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49829-8|AAV28348.1|  515|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U49829-7|AAA93388.3|  513|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin prote...    28   7.4  
Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>U49829-8|AAV28348.1|  515|Caenorhabditis elegans Hypothetical
           protein F27D9.8b protein.
          Length = 515

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 89  KYINSELSELHKKRYNNRYFMSKNK*IFCF*LNPEENEKLNKVIYAY 229
           +Y+N +  E  K R+  R+ + K   +  F + P  +E LNK +Y Y
Sbjct: 293 EYLNDDDQEELKIRWQPRFLILKGSDVCFFDVPPLNSEDLNKCVYLY 339


>U49829-7|AAA93388.3|  513|Caenorhabditis elegans Hypothetical
           protein F27D9.8a protein.
          Length = 513

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 89  KYINSELSELHKKRYNNRYFMSKNK*IFCF*LNPEENEKLNKVIYAY 229
           +Y+N +  E  K R+  R+ + K   +  F + P  +E LNK +Y Y
Sbjct: 293 EYLNDDDQEELKIRWQPRFLILKGSDVCFFDVPPLNSEDLNKCVYLY 339


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical
           protein T28B8.3a protein.
          Length = 1838

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = -2

Query: 263 LEFFFFLMVKNHMHISLYLI----FRFLQDLIKNRKF 165
           + FF+ +++K H H  L ++    F+ + DL+K R+F
Sbjct: 75  VRFFYEVLIKEHQHTDLIMVACEAFKNMMDLVKPRRF 111


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 759 IRTLKGAPGFRAXPGEPGEPWARKEGXKTERN 854
           I+ L+G PG    PG PG P       K  RN
Sbjct: 189 IKKLRGPPGEPGEPGRPGTPGTPGNDGKDGRN 220


>AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin protein
           15 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +2

Query: 242 LKKKKTRGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNLIA 373
           LKK   R G + PI  I + I  +W SF N +  K L L NLIA
Sbjct: 160 LKKYIDRQGRKSPIPLIPNIIGRNWVSF-NYILTKFLFLVNLIA 202


>Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41E3.2 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 774 GAPGFRAXPGEPGEP 818
           GAPG +  PG PGEP
Sbjct: 233 GAPGAKGEPGTPGEP 247


>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 471 LPFAIQXAQLLGRAIGAGLFAITPAGE--RGMCCKAIKLGNARV 346
           L F+     L G++IGA L   T AGE   G   K +K G++RV
Sbjct: 761 LDFSSDSQYLRGQSIGAHLLFWTKAGEICDGTSVKDVKWGSSRV 804


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,667,487
Number of Sequences: 27780
Number of extensions: 401873
Number of successful extensions: 2467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2398
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)