Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0047.Seq
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025461-5|AAB70992.1|  297|Caenorhabditis elegans Hypothetical ...    30   2.4  
AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical ...    29   3.1  
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>AF025461-5|AAB70992.1|  297|Caenorhabditis elegans Hypothetical
           protein M01D1.8 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
 Frame = -2

Query: 399 NCNTTHYRANWVPGPPXVIPI---------NHYLGVLKTNKIEPRSYSIIPCTKYSST 253
           N  T+ YR N  P P  + P+         NH+L VL  +KIE   +S  P +    T
Sbjct: 80  NGTTSIYRGNKTPQPEAMFPVPQFDAKSWFNHFLYVLNVSKIEGLEFSADPLSPMEHT 137


>AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical
           protein Y50E8A.5 protein.
          Length = 257

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -2

Query: 420 VVKRRPVNCNTTHYRANWVPGPPXVIPINHYLGV-LKTNKIEPRSYSIIPCT 268
           +V RR VN  T + R ++  G        H   + L  N I+P+  S  PCT
Sbjct: 182 LVNRRNVNITTCYCRGHYCNGLGFAEATRHSKALELPVNSIDPKESSGFPCT 233


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 156  EPAFFRTPAHRRYLRK 109
            EP+F RTPAH  YL K
Sbjct: 1451 EPSFLRTPAHMTYLAK 1466


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 8   GSPGLAGNCCG*KARSCICAPRCRCT 85
           G  G  G CC      C C P+C CT
Sbjct: 59  GGGGGCGCCCCRPRCCCCCRPKCCCT 84


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 8   GSPGLAGNCCG*KARSCICAPRCRCT 85
           G  G  G CC      C C P+C CT
Sbjct: 61  GGGGGCGCCCCRPRCCCCCRPKCCCT 86


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 8   GSPGLAGNCCG*KARSCICAPRCRCT 85
           G  G  G CC      C C P+C CT
Sbjct: 64  GGGGGCGCCCCRPRCCCCCRPKCCCT 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,227,255
Number of Sequences: 27780
Number of extensions: 410221
Number of successful extensions: 885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)