Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0047.Seq
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   0.88 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   3.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.2  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -2

Query: 399 NCNTTHYRANWVPGPPXVIPINHYLGVLKTNKIEP 295
           NC   +Y  N++   P  +P+  Y G   +  + P
Sbjct: 108 NCKKLYYNINYIEQIPVPVPVPIYCGNFPSRPMGP 142


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -2

Query: 399 NCNTTHYRANWVPGPPXVIPINHYLGVLKTNKIEP 295
           N    +Y  N++   P  +P+  Y G      +EP
Sbjct: 347 NYKKLYYNINYIEQIPVPVPVPIYCGNFPPRSMEP 381


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 742 DVGSPRSLIVDSCSKLEQHSTXSRSILL 659
           ++G+P   I++SC + E H+     I L
Sbjct: 513 EMGTPLENILESCQQDETHAPEKTKIFL 540


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 429 SHDVVKRRPVNCNTTHYRANWVPGP 355
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,328
Number of Sequences: 438
Number of extensions: 5316
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)