Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0045.Seq
         (511 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.025
UniRef50_UPI00004D6FB2 Cluster: Growth/differentiation factor 2 ...    32   6.6  
UniRef50_A5KQP0 Cluster: Putative uncharacterized protein; n=1; ...    32   6.6  
UniRef50_Q9M898 Cluster: F16B3.5 protein; n=11; Magnoliophyta|Re...    32   8.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 40.3 bits (90), Expect = 0.025
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -1

Query: 109 AGWWYLPVRTHKRSYHQ 59
           A WWYLP RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_UPI00004D6FB2 Cluster: Growth/differentiation factor 2
           precursor (GDF-2) (Bone morphogenetic protein 9)
           (BMP-9).; n=1; Xenopus tropicalis|Rep:
           Growth/differentiation factor 2 precursor (GDF-2) (Bone
           morphogenetic protein 9) (BMP-9). - Xenopus tropicalis
          Length = 374

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 257 CVKWLLEPIDIYNV--KAPPTLRYKF*GLNYSYNGC 156
           CV   LEPI I+ +  K  PT++YK+ G+  +  GC
Sbjct: 338 CVPTQLEPISIFYIDDKGIPTMKYKYEGMKVAKCGC 373


>UniRef50_A5KQP0 Cluster: Putative uncharacterized protein; n=1;
            Ruminococcus torques ATCC 27756|Rep: Putative
            uncharacterized protein - Ruminococcus torques ATCC 27756
          Length = 1848

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -3

Query: 218  VKAPPTLRYKF*GLNYSYNGCPTLQTETHYCFTAEIGRVVVPTRADSQEVLPPVITQ 48
            VKA P   Y F G  +S N    + T+  Y FT   G   +  + +   V PPV T+
Sbjct: 1366 VKATPDKDYHFVGWYHSSNAETPVSTDAEYEFTVS-GNYALTAKFEKDNVTPPVETK 1421


>UniRef50_Q9M898 Cluster: F16B3.5 protein; n=11; Magnoliophyta|Rep:
           F16B3.5 protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 348

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 350 VDIYFK*KLVLSRFFLYFFYCLDVWTSSQPTCVKWLLEPI 231
           + +YF+  +V ++ F+YF YCL   TS    C+K+ L PI
Sbjct: 188 LQVYFQ-SIVAAKDFIYFIYCLTFVTSH--LCLKFALIPI 224


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,484,956
Number of Sequences: 1657284
Number of extensions: 9029822
Number of successful extensions: 18756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18750
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)