Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0045.Seq
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    30   0.18 
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    26   3.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   8.7  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.7  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 96  YHHPAYFCREAVMRFGLKGGTAVVTIIETLELISQGG 206
           +  P+ F  E V+   L GGTAVV +  TLE I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 311 FFLYFFYCLDVWTSSQPTCVKWLLEPIDIYNV 216
           F +YFFY L V  ++ P  +K    P  + ++
Sbjct: 41  FIVYFFYLLHVRINTSPLFIKTTTRPTALIHI 72


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 22  KNQTRKIIICVITGGRT 72
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 281 VWTSSQPTCVKWLLEPIDIYNVKAPPTLR 195
           ++++SQP  +K    P+DI N+ A   L+
Sbjct: 221 LYSASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,006
Number of Sequences: 5004
Number of extensions: 38237
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)