Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0045.Seq
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             29   1.7  
SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 105 PAYFCREAVMRFGLKGGTAVVTIIETLELISQGGWRFYVVDVY 233
           P+Y     +  +   GGT  +T I TLE+I +   R +V D Y
Sbjct: 109 PSYLLGHPIEDYDASGGTVYITAIYTLEMICKIISRGFVKDSY 151


>SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 149 GWDSRCNYN*DLRTYISRWVALLRCRC-LW--APVTT*RRWAVSSSTH 283
           GW +R   + D   Y+ ++ AL+RC   L+  + V   RR+ V+SST+
Sbjct: 354 GWAARMQASNDYLQYLEKFFALIRCEMGLFEASYVMFFRRYPVTSSTN 401


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 114 FCREAVMRFGLKGGTAVVTIIETLELISQG 203
           F   A   FG  G TAV  +I TL L+ QG
Sbjct: 692 FYETAKYPFGFFGSTAVCKLIPTLSLMCQG 721


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,567,914
Number of Sequences: 59808
Number of extensions: 280083
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)