Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0044.Seq
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   2.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   2.1  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   2.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.8  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.8  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 455 YWCXGILSXYDFDNRAKGPPR 393
           Y    ++S + FDN  +GPP+
Sbjct: 335 YGTTRLMSSFAFDNNDQGPPQ 355


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 455 YWCXGILSXYDFDNRAKGPPR 393
           Y    ++S + FDN  +GPP+
Sbjct: 336 YGTTRLMSSFAFDNNDQGPPQ 356


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 455 YWCXGILSXYDFDNRAKGPPR 393
           Y    ++S + FDN  +GPP+
Sbjct: 336 YGTTRLMSSFAFDNNDQGPPQ 356


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = -2

Query: 545 M*LGIVGHHSSH---PSDLHF 492
           M +G+ GHHS H   PSD ++
Sbjct: 3   MDVGMYGHHSQHGTYPSDNYY 23


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = -2

Query: 545 M*LGIVGHHSSH---PSDLHF 492
           M +G+ GHHS H   PSD ++
Sbjct: 3   MDVGMYGHHSQHGTYPSDNYY 23


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = -2

Query: 545 M*LGIVGHHSSH---PSDLHF 492
           M +G+ GHHS H   PSD ++
Sbjct: 3   MDVGMYGHHSQHGTYPSDNYY 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,012
Number of Sequences: 336
Number of extensions: 2561
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)