Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0044.Seq
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0397 + 21753095-21753814                                         29   3.1  

>01_05_0397 + 21753095-21753814
          Length = 239

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = -2

Query: 236 CIAPLWAGPRPDVRRCVXPLPA*TVFRPLTLESTFFNSGLLFQTGTTLNPISVYSFDL*G 57
           C A L +GP PD R CV      TV   +T  +T  +S   F   +++ P++    D  G
Sbjct: 63  CAARLRSGPNPDHRCCVCRTLCSTVV--ITKAATAAHSVFTFSDQSSM-PVAAAQDD--G 117

Query: 56  ILPISAYWLXXXVS 15
             P+ AYW    +S
Sbjct: 118 -RPVGAYWCSAAMS 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,152,025
Number of Sequences: 37544
Number of extensions: 282007
Number of successful extensions: 480
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)