Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0044.Seq
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
           protein Y54E10A.11 protein.
          Length = 1446

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -3

Query: 625 FERSVPWKSQFISTNPIPCXXCXFQQICNWVS*GITVRIQVI 500
           F  ++PW+++  S N I C  C F     W+     + ++++
Sbjct: 375 FTDNLPWQAE-ASMNAIHCWFCTFSDFVKWILGNDRINLEIL 415


>Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical
           protein T11G6.8 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 209 WDPPKGERYKNXXLLSRC 262
           W P KG RYKN  L   C
Sbjct: 58  WQPGKGARYKNTELCQTC 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,081,482
Number of Sequences: 27780
Number of extensions: 246390
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)