Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0044.Seq
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 440 ILSXYDFDNRAKGPP 396
           I+S +DF ++ +GPP
Sbjct: 343 IMSSFDFQSKDQGPP 357


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 143 ESTFFNSGLLFQTGTTLNPI 84
           E  +  SG L+   TT+NPI
Sbjct: 307 EWLYILSGCLYYFSTTINPI 326


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 592 ISTNPIPCXXCXFQQICNWVS 530
           + +NP  C     Q++ +WVS
Sbjct: 921 LGSNPWSCRCKFLQELSSWVS 941


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 417  IEIVTRENAXAPVXNLIAVYDDKNAEMKITW 509
            + I+T E A +     I V D     +K+TW
Sbjct: 967  VTIITAEEAPSGPPTSIRVDDLDQHTLKVTW 997


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,233
Number of Sequences: 438
Number of extensions: 3003
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)