Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0037.Seq
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 32  MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 166
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 4   YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 117
           Y C  +    +     LRR   +  ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -3

Query: 246 IHQNXRLRTRGPPSIGFDLIKALIPSLVRVLIACIS 139
           I+Q   L  +   +IG+ + +  +PS++ V+++ +S
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS 262


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +1

Query: 4   YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 117
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +1

Query: 4   YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 117
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +1

Query: 4   YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 117
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 220 YTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,554
Number of Sequences: 438
Number of extensions: 2303
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)