Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0032.Seq
         (843 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    41   0.034
UniRef50_Q0LI94 Cluster: Putative uncharacterized protein; n=1; ...    40   0.10 
UniRef50_Q6PEX3 Cluster: Keratin-associated protein 26-1; n=4; E...    36   1.3  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 41.1 bits (92), Expect = 0.034
 Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
 Frame = -2

Query: 740 RXNFEKLIGAYSXT--AVYGIPXHIFISAIPQCLETKVFKACVLXXMINSAETXQWA-GH 570
           R NFEK +        A +G    I  S IPQCL++KVF  CVL  M+  +ET     G 
Sbjct: 317 RSNFEKEVNRRIQLGWAAFGKLRVILTSEIPQCLKSKVFDQCVLPVMVYGSETWSLTMGL 376

Query: 569 TXRSVGRPRAHAPLRWADDLRDMLQKIGFEKRRTV 465
             R     RA         LRD ++     +R  V
Sbjct: 377 IRRLKVTQRAMERAMLGVSLRDRIRNEEIRRRTRV 411



 Score = 33.5 bits (73), Expect = 6.8
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -1

Query: 513 LTRYAAKDWIRKAEDRSLKRTMGEAYIQ 430
           L + A   W++ A+DRSL +++GEA++Q
Sbjct: 464 LVKVAGSTWMQAAQDRSLWKSLGEAFVQ 491


>UniRef50_Q0LI94 Cluster: Putative uncharacterized protein; n=1;
           Herpetosiphon aurantiacus ATCC 23779|Rep: Putative
           uncharacterized protein - Herpetosiphon aurantiacus ATCC
           23779
          Length = 453

 Score = 39.5 bits (88), Expect = 0.10
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
 Frame = -2

Query: 596 AETXQWAGHTXRSVGR---PRAHAPLRWADDLRDMLQK---IGFEKRRTVR*SGLWERPT 435
           A   QWAG+T R   R   PRA  PLRW   LR  L +   +  E+RR V+        +
Sbjct: 144 APLPQWAGYTLRGWARKHLPRAATPLRWTYGLRSWLSRTALVPLEQRRLVQTQTQKPATS 203

Query: 434 SSSREIQVDDHCETTSID---XTTILSVSCNRGC---IARSVSLGNPVL 306
           + SR++     C T   +       L V    GC   +A     G P+L
Sbjct: 204 TISRKVVYFHGCSTNYYEPHVGKAALEVLTRNGCEVVLANQGCCGLPML 252


>UniRef50_Q6PEX3 Cluster: Keratin-associated protein 26-1; n=4;
           Euarchontoglires|Rep: Keratin-associated protein 26-1 -
           Homo sapiens (Human)
          Length = 210

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = -2

Query: 440 PTSSSREIQVDDHCETTSIDXTTILSVSCNRGCIARSVSLGNPVLVYDRRTQQSLSLLPG 261
           PTSS     V D+C+ T  + T+   V C  G +    S G+    Y  R  Q  S LP 
Sbjct: 43  PTSSQDHTWVTDNCQETCGEPTSCQPVHCETGNL--ETSCGSSTAYYVPRPCQGSSFLPA 100

Query: 260 TTHLSQCV 237
           +   S C+
Sbjct: 101 SFFSSSCL 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,633,061
Number of Sequences: 1657284
Number of extensions: 14121801
Number of successful extensions: 28926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28922
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73783549980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)