Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0032.Seq
         (843 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC057825-1|AAH57825.1|  210|Homo sapiens keratin associated prot...    36   0.18 
AB096936-1|BAE46351.1|  210|Homo sapiens keratin associated prot...    36   0.18 

>BC057825-1|AAH57825.1|  210|Homo sapiens keratin associated protein
           protein.
          Length = 210

 Score = 35.9 bits (79), Expect = 0.18
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = -2

Query: 440 PTSSSREIQVDDHCETTSIDXTTILSVSCNRGCIARSVSLGNPVLVYDRRTQQSLSLLPG 261
           PTSS     V D+C+ T  + T+   V C  G +    S G+    Y  R  Q  S LP 
Sbjct: 43  PTSSQDHTWVTDNCQETCGEPTSCQPVHCETGNL--ETSCGSSTAYYVPRPCQGSSFLPA 100

Query: 260 TTHLSQCV 237
           +   S C+
Sbjct: 101 SFFSSSCL 108


>AB096936-1|BAE46351.1|  210|Homo sapiens keratin associated protein
           protein.
          Length = 210

 Score = 35.9 bits (79), Expect = 0.18
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = -2

Query: 440 PTSSSREIQVDDHCETTSIDXTTILSVSCNRGCIARSVSLGNPVLVYDRRTQQSLSLLPG 261
           PTSS     V D+C+ T  + T+   V C  G +    S G+    Y  R  Q  S LP 
Sbjct: 43  PTSSQDHTWVTDNCQETCGEPTSCQPVHCETGNL--ETSCGSSTAYYVPRPCQGSSFLPA 100

Query: 260 TTHLSQCV 237
           +   S C+
Sbjct: 101 SFFSSSCL 108


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,856,334
Number of Sequences: 237096
Number of extensions: 2183266
Number of successful extensions: 3211
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3211
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)