Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0032.Seq
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50890.1 68414.m05722 expressed protein                             30   1.7  
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea...    28   8.9  

>At1g50890.1 68414.m05722 expressed protein
          Length = 821

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -2

Query: 275 SLLPGTTHLSQCVFLFPQALD*TLLSAARSL*CVHLQTRCNSSDPLILLVCQS 117
           SLLP    LSQ   + PQ+L+  L S    L C +  TR  ++D LI L   S
Sbjct: 228 SLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAADVLISLAVHS 280


>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
           family protein SOF1 (involved in rRNA processing)
           protein-yeast
          Length = 442

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 389 LWSHNDHQPVSLYYWM*ASPI-VRFN 463
           +W+HN  QPV  + W   S I VRFN
Sbjct: 177 IWNHNRSQPVQSFQWGTDSVISVRFN 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,494,088
Number of Sequences: 28952
Number of extensions: 315766
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)