Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0030.Seq
         (454 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   4.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   9.4  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 52  VHIQYLPLSRVVHHLHV 2
           +++QYLP+ R + H+ +
Sbjct: 169 MNLQYLPMDRQLCHIEI 185


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 283 PSLAGSWKQEQVKIIYYD 336
           P+L   WK E+++ IY +
Sbjct: 469 PALIEGWKVEKIQEIYLE 486


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 VVHRVLPTETTIWWAFHH 289
           VV+ +    TTI W  HH
Sbjct: 122 VVNHLSSDSTTIHWHGHH 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,615
Number of Sequences: 336
Number of extensions: 1855
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)